g.raimondii_cottongen_reftransV1_0001237, g.raimondii_cottongen_reftransV1_0001237 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001237
Unique Nameg.raimondii_cottongen_reftransV1_0001237
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length2285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr12chromosomeg.raimondii_cottongen_reftransV1_0001237:1..2285 .
Chr12:14840407..14844985 +
Homology
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: C6TBB5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 496.123 bits (1276), Expect = 3.985e-167
Identity = 242/302 (80.13%), Postives = 272/302 (90.07%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            ME+M SFWQLGD+LRG SKASEDHKWLMVASKLAEQTR+KGER+NNLDLSKGP E R+RDKFGF E+NKF++LN +MLNLDSK  +++SKS+ RNG+Y  ++VYQKNN++ + N+ +NKY+G+   NK+  NN+  N+ N   +N  NA DKRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIR+RK CKALEED+FRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGS
Sbjct:    1 MENMQSFWQLGDELRGHSKASEDHKWLMVASKLAEQTRLKGERVNNLDLSKGPIETRSRDKFGFQEENKFDSLNLSMLNLDSKFTENVSKSSLRNGVYGMNSVYQKNNANLVSNVISNKYNGSIQHNKE-INNNTGNNINTNESNNTNATDKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRKFCKALEEDSFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGS 301
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A0A0LB43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G585860 PE=4 SV=1)

HSP 1 Score: 497.278 bits (1279), Expect = 1.938e-166
Identity = 244/304 (80.26%), Postives = 270/304 (88.82%), Query Frame = 1 
Query:  139 CKMESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            C M+   SFWQLGD+LRGQ+K SEDHKWL  ASKLAEQTR KGERMNNLD SK   + R R+KFGF EDNKFE+ NFNML+LDSK+ D ++KS+ RNGIYN +AVY KNN++  GNL   K+SGN++ NKD+ N S+TN+N  EN N+ NA DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRK+C+ALEED+FRPVLHHYDGPKFRLELS+PETLDL+DLCEQAGS
Sbjct:   68 CNMDGSYSFWQLGDELRGQTKVSEDHKWLWAASKLAEQTRSKGERMNNLDFSKSTLDARPREKFGFQEDNKFESFNFNMLSLDSKMTDPVNKSSLRNGIYNMNAVYVKNNTNVAGNLPGAKFSGNDYINKDLTNYSSTNNNVGENANSINAIDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCRALEEDSFRPVLHHYDGPKFRLELSIPETLDLLDLCEQAGS 371
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: U5FM68_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09910g PE=4 SV=1)

HSP 1 Score: 493.041 bits (1268), Expect = 6.856e-166
Identity = 245/302 (81.13%), Postives = 272/302 (90.07%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            MES++SFWQLGD+LRGQSK SEDHKWLM A KLAEQTR KGERMNNLDLSKG  E+R+RDK GF E+NKFE+ NFNM+NL+SK+ ++ +KS+ RN  YN +AVYQKNN +++GN++ +KYSGNN  +KD     + +SNNN NN+ NN  DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRK+ KALEEDAFRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGS
Sbjct:    1 MESLHSFWQLGDELRGQSKVSEDHKWLMAALKLAEQTRGKGERMNNLDLSKGLPEMRSRDKIGFQEENKFESFNFNMMNLESKMTENGNKSSLRNNAYNMNAVYQKNNINSVGNMTGSKYSGNNLSSKD----PSNHSNNNINNDNNNTVDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLYKALEEDAFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGS 298
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: I3SHH8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 492.656 bits (1267), Expect = 1.095e-165
Identity = 241/303 (79.54%), Postives = 275/303 (90.76%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASED-HKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            M++MNSFWQLGD+LRG +K SED HKW MVASKLAEQTR+KGER+NNLDLSKGP E R R+K GF E+NKF+ LNF+MLNL+S+I +++SKS+FRNG+YN +AVYQK+N++ +GN++ NKY+GN   NKD    SN  SNNN  +N++N A+KRFKTLPA ETLPRNEVLGGYIFVCNNDTMQEDLKR+LFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIR+R +CKALEED+FRPVLHHYDGPKFRLELSVPETLDL+DLCEQAGS
Sbjct:    1 MDTMNSFWQLGDELRGHTKVSEDDHKWFMVASKLAEQTRLKGERLNNLDLSKGPIETRPREKMGFQEENKFDTLNFSMLNLESRISENMSKSSFRNGVYNMNAVYQKSNANLVGNININKYNGNVQLNKD----SNNISNNNNESNSSNVAEKRFKTLPAAETLPRNEVLGGYIFVCNNDTMQEDLKRRLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRVRTICKALEEDSFRPVLHHYDGPKFRLELSVPETLDLLDLCEQAGS 299
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Match: A0A059AG90_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02349 PE=4 SV=1)

HSP 1 Score: 491.886 bits (1265), Expect = 1.588e-165
Identity = 240/302 (79.47%), Postives = 274/302 (90.73%), Query Frame = 1 
Query:  145 MESMNSFWQLGDDLRGQSKASEDHKWLMVASKLAEQTRIKGERMNNLDLSKGPAEVRTRDKFGFHEDNKFENLNFNMLNLDSKIGDSISKSTFRNGIYNTDAVYQKNNSHNIGNLSANKYSGNNHCNKDIXXXXXXXXXXXXXXXXXXXXDKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQAGS 1050
            ME+M+SFWQLGD+LRGQS+ SEDHKWLMVASKLAEQT  K ERMNN D+ KGPAE+R RDK  + EDNKFE+ NFNMLN++SK+ +++SKS FRN IY T+AV QK+N ++IG++++NKYS N H NKD    ++ ++ N+EN +ANNA DKRFKTLPA+ETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEA+SFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRK+CKALEED+FRPVLHHYDGPKFRLELSVPETL+L+DLCEQAGS
Sbjct:    1 MENMHSFWQLGDELRGQSRVSEDHKWLMVASKLAEQTMCKSERMNNADILKGPAEIRPRDKISYQEDNKFESFNFNMLNMESKMTENVSKSCFRNSIYETNAVCQKSNLNSIGSMASNKYSSN-HFNKD----ASASAANSENCSANNAVDKRFKTLPASETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEASSFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKLCKALEEDSFRPVLHHYDGPKFRLELSVPETLNLLDLCEQAGS 297
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: B2_DAUCA (B2 protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 6.041e-85
Identity = 120/150 (80.00%), Postives = 139/150 (92.67%), Query Frame = 1 
Query:  595 DKRFKTLPATETLPRNEVLGGYIFVCNNDTMQEDLKRQLFGLPPRYRDSVRAITPGLPLFLYNYTTHQLHGIFEAASFGGSNIDPTAWEDKKCKGESRFPAQVRIRIRKVCKALEEDAFRPVLHHYDGPKFRLELSVPETLDLMDLCEQA 1044
            +KRFKTLP  E+LPRNE +GGYIFVCNNDTMQE+LKRQLFGLPPRYRDSVRAITPGLPLFLYNY+THQLHG+FEAASFGG+NIDPTAWEDKK +GESRFPAQVR+  RK+C+ LEED+FRP+LHHYDGPKFRLEL++PE + L+D+ E+ 
Sbjct:   56 EKRFKTLPPAESLPRNETVGGYIFVCNNDTMQENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPKFRLELNIPEAISLLDIFEET 205
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Transcription and mRNA export factor SUS1 OS=Arabidopsis thaliana GN=SUS1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.643e-36
Identity = 79/117 (67.52%), Postives = 99/117 (84.62%), Query Frame = -3 
Query: 1885 MKHSVNRPPTPDGAED------QGNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAAL 2217
            MKHSVNRPPTPD  ED      + ++ TL+EIIN+KL+ESGEKE LMEL+R+RL+ECGWKDEM+  CR +VKKKGR +VT+D+L+ +ITPKGRASVPD VKAELL RI++F++SAAL
Sbjct:    1 MKHSVNRPPTPD--EDDVADGFEKDKVTLREIINVKLVESGEKENLMELVRDRLVECGWKDEMRIACREHVKKKGRKDVTVDELIRVITPKGRASVPDSVKAELLNRIQNFIVSAAL 115
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_TAEGU (Transcription and mRNA export factor ENY2 OS=Taeniopygia guttata GN=ENY2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.590e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    2 NKDAQMRATINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKDVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_MOUSE (Transcription and mRNA export factor ENY2 OS=Mus musculus GN=Eny2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_HUMAN (Transcription and mRNA export factor ENY2 OS=Homo sapiens GN=ENY2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_BOVIN (Transcription and mRNA export factor ENY2 OS=Bos taurus GN=ENY2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 6.101e-22
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KLIE+GE+ERL ELLR +LIECGWKD++KA C+  +K+KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    7 NKDAQMRAAINQKLIETGERERLKELLRAKLIECGWKDQLKAHCKEVIKEKGLEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRTFLAQHA 99
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_DANRE (Transcription and mRNA export factor ENY2 OS=Danio rerio GN=eny2 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 9.302e-22
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = -3 
Query: 1900 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFL 2166
              E  ++  IN KLIE GE+ERL ELLR +LIECGW+D++KALC+  +K+KG  NVT++DLV  +TPKGRA VPD VK ELLQRIR+FL
Sbjct:    2 SKESQMRAAINQKLIEMGERERLKELLRAKLIECGWRDQLKALCKEVIKEKGIENVTVEDLVAGVTPKGRALVPDSVKKELLQRIRAFL 90
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_XENLA (Transcription and mRNA export factor ENY2 OS=Xenopus laevis GN=eny2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.400e-21
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = -3 
Query: 1888 EPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2160
            +  ++ +IN KLIE+GE+ERL ELLR +LIECGW+D++KA C+  + +KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    4 DAQMKAVINQKLIETGERERLKELLRAKLIECGWRDQLKAHCKDVINEKGVEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRAFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2_XENTR (Transcription and mRNA export factor ENY2 OS=Xenopus tropicalis GN=eny2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.155e-21
Identity = 55/91 (60.44%), Postives = 70/91 (76.92%), Query Frame = -3 
Query: 1888 EPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2160
            +  ++  IN KLIE+GE+ERL ELLR +LIECGW+D++KA C+  + +KG  +VT+DDLV  ITPKGRA VPD VK ELLQRIR+FL   A
Sbjct:    4 DAQMKAAINQKLIETGERERLKELLRAKLIECGWRDQLKAHCKDVINEKGVEHVTVDDLVAEITPKGRALVPDSVKKELLQRIRAFLAQHA 94
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Match: ENY2A_SALSA (Transcription and mRNA export factor ENY2-1 OS=Salmo salar GN=eny2-1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.275e-18
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = -3 
Query: 1888 GNEPTLQEIINIKLIESGXXXXXXXXXXXXLIECGWKDEMKALCRSYVKKKGRNNVTLDDLVHLITPKGRASVPDFVKAELLQRIRSFLMSAA 2166
              +  ++  IN KL E GE+ERL ELLR +L ECGW+D++KALC+  +K+KG  + T++DLV  ITPKGR  VPD VK ELLQRIR+FL   A
Sbjct:    2 SKDSKMRATINQKLTEMGERERLKELLRAKLTECGWRDQLKALCKDVIKEKGLEHATVEDLVVEITPKGRVLVPDSVKRELLQRIRAFLAQHA 94
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
C6TBB5_SOYBN3.985e-16780.13Putative uncharacterized protein OS=Glycine max PE... [more]
A0A0A0LB43_CUCSA1.938e-16680.26Uncharacterized protein OS=Cucumis sativus GN=Csa_... [more]
U5FM68_POPTR6.856e-16681.13Uncharacterized protein OS=Populus trichocarpa GN=... [more]
I3SHH8_LOTJA1.095e-16579.54Uncharacterized protein OS=Lotus japonicus PE=2 SV... [more]
A0A059AG90_EUCGR1.588e-16579.47Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]

Pages

back to top
BLAST of g.raimondii_cottongen_reftransV1_0001237 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
B2_DAUCA6.041e-8580.00B2 protein OS=Daucus carota PE=2 SV=1[more]
SUS1_ARATH2.643e-3667.52Transcription and mRNA export factor SUS1 OS=Arabi... [more]
ENY2_TAEGU5.590e-2261.29Transcription and mRNA export factor ENY2 OS=Taeni... [more]
ENY2_MOUSE6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Mus m... [more]
ENY2_HUMAN6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Homo ... [more]
ENY2_BOVIN6.101e-2261.29Transcription and mRNA export factor ENY2 OS=Bos t... [more]
ENY2_DANRE9.302e-2262.92Transcription and mRNA export factor ENY2 OS=Danio... [more]
ENY2_XENLA2.400e-2160.44Transcription and mRNA export factor ENY2 OS=Xenop... [more]
ENY2_XENTR8.155e-2160.44Transcription and mRNA export factor ENY2 OS=Xenop... [more]
ENY2A_SALSA1.275e-1855.91Transcription and mRNA export factor ENY2-1 OS=Sal... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013989Development/cell death domainSMARTSM00767dcdcoord: 167..299
e-value: 1.7E-86
score: 303.3
IPR013989Development/cell death domainPFAMPF10539Dev_Cell_Deathcoord: 170..296
e-value: 9.7E-41
score: 138.5
IPR013989Development/cell death domainPROSITEPS51222DCDcoord: 167..299
score: 53.614
NoneNo IPR availablePANTHERPTHR10857:SF43SUBFAMILY NOT NAMEDcoord: 34..302
NoneNo IPR availablePANTHERPTHR10857COPINEcoord: 34..302

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001237 ID=g.raimondii_cottongen_reftransV1_0001237; Name=g.raimondii_cottongen_reftransV1_0001237; organism=Gossypium raimondii; type=contig; length=2285bp
TCGTCACATAATTCTATAAATACAATGAAAATCCCTTCTTACATAATTTC
TCGCTGTCCCCCTCTGTGCCGTGTCTTGCGGGTTTCACTTCACAGCTAGC
AAAGGTAAAAAAGATAAAAAGAAAGAAAATAAAGGATCTGCAAGATGGAA
AGCATGAATAGCTTTTGGCAGTTAGGAGATGATCTCCGGGGACAATCTAA
AGCCTCAGAGGATCACAAATGGTTGATGGTTGCCTCCAAACTGGCTGAAC
AAACGAGGATAAAGGGTGAGCGTATGAACAATCTCGACCTTTCAAAGGGT
CCAGCTGAAGTAAGGACAAGGGATAAATTTGGGTTCCATGAAGACAACAA
ATTCGAGAACCTTAACTTCAATATGTTGAACTTGGACTCCAAGATCGGAG
ATAGTATAAGCAAAAGTACCTTCCGAAATGGTATTTACAACACCGATGCT
GTTTACCAGAAAAATAACAGCCACAACATTGGGAACCTGTCTGCCAACAA
ATATAGTGGCAACAACCATTGCAACAAAGATATTAATAATAACAGCAACA
CCAACTCCAACAACAACGAGAACAACAATGCAAACAATGCTGCCGATAAA
AGGTTCAAGACTTTGCCTGCCACCGAGACACTCCCGAGAAATGAGGTGCT
TGGTGGATACATCTTTGTTTGCAACAATGACACAATGCAAGAAGATCTTA
AGCGCCAGCTATTTGGTTTACCGCCAAGATACAGGGACTCTGTTCGGGCA
ATCACACCTGGCTTGCCATTGTTTCTCTATAACTACACCACTCATCAGTT
GCATGGTATTTTTGAGGCAGCAAGTTTTGGGGGTTCTAACATTGATCCAA
CTGCTTGGGAAGACAAAAAGTGTAAAGGCGAGTCGAGGTTTCCTGCTCAG
GTGAGAATCCGTATAAGAAAGGTATGCAAGGCATTGGAAGAGGATGCTTT
TAGGCCAGTCTTGCACCACTATGATGGTCCCAAGTTCCGTCTCGAGCTGT
CAGTTCCTGAGACTTTGGATCTAATGGACCTTTGTGAACAAGCAGGCTCC
CCATAAACAAAATGCTAGCCGAGTGCAAATGTAGTAGTAGTAGGGTTTGT
GATGCACGTTTCCGGAGATTTTTCCATAGAGCGCAAGCTGTGGTGGGTGT
TAAGTCCAGTTGGGGAAAAAGTAGGAAATGGCATTAGCCACATATGAATA
AATGCGTTCATGTCATGTGAAAGATGCATTGTAAAACTTTTGCATTAATA
TGCTATGAATTAAAATCCTATCAGATATATTTGCAAGATGTCAAAAGGAA
ATGGCAACTACGTGTAATGTTCAAGTCCTCAACAACTGAAGGTTTTGATG
TCTATTTTTGTGCTTATAATATGAACTTTCTCCTGTCTTCTTCAATCTCA
TTTTCAAAGTGAAGTCCTAAGTGCATGCAAATATGCAAATTCCAATTAAG
GTTTCTTCAATCTCTCATTCCAATCACCTAAGAGAACAAGCTAAAATAAT
TTAACCATGACTTCATTTGACTTCCCAGTTGTGTAGCAATAACTCAAAGA
GAGGATACTCATCATGGAAAGAAGTATAGCTTCAATCAGAGGATTTACAA
GGTCAAATATGTTGATCTAATGCACAGTTTTCCTCCCTTAAACCCAGCAA
TAGAAGCGTTTGTAGACAACCGAAACCATCTGTAATTTGCTGATCCTATC
ACAGCAAGAATGGATAAATGAAATTACATCCTCATGGCTGCAAACCCTAT
TCATTCCATTGGTGTAATCATTCAACAAGATGCTAAAGACGAACCCTATT
GAGGCTTCATTGAAGTCTATATTGCGCAGCTGACAGCTCTGTAACTTTCC
CCCCTCTTTGCTAATCAATGCATGCTGATGGTCAAAGAGCAGCGGACATG
AGAAAAGAACGAATTCTTTGCAATAGCTCAGCCTTTACGAAGTCTGGGAC
AGAAGCTCTGCCTTTTGGGGTGATCAAATGAACAAGGTCATCCAAAGTGA
CATTATTTCTTCCTTTCTTCTTAACATATGATCTGCAAAGAGCTTTCATC
TCATCCTTCCATCCACATTCTATAAGTCTTTCTCTTAACAGTTCCATTAA
TCTCTCTTTTTCCCCGCTTTCAATTAACTTGATATTAATAATTTCTTGAA
GGGTGGGTTCATTCCCTTGATCTTCTGCACCATCAGGGGTTGGAGGCCGA
TTTACTGAATGTTTCATGATGTTAAATTAAATCTCCCAAAATAGAAATGA
AAATTTGTGAGGAAATTGGAGAAATTTTTATACTT
back to top
Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR013989Dev_and_cell_death_domain