g.raimondii_cottongen_reftransV1_0001187, g.raimondii_cottongen_reftransV1_0001187 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001187
Unique Nameg.raimondii_cottongen_reftransV1_0001187
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length2100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr07chromosomeg.raimondii_cottongen_reftransV1_0001187:1..2100 .
Chr07:13603695..13606791 -
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: F6HRH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0231g00050 PE=4 SV=1)

HSP 1 Score: 382.874 bits (982), Expect = 6.307e-123
Identity = 190/340 (55.88%), Postives = 241/340 (70.88%), Query Frame = 3
Query:  372 EAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEG--DGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENV 1385
            +A+ +RR  VY ++LQSYD +R+R+ +L +AK ++LSY PG WIE  GG K SDY+VP+TTSL+L+GPKG GKSSL+NKISRVFEDD FAPERAQ+SYN SVGDGTY+LQ YMIPRGS SFCLYD+RGL+D +S+N+ M+++W+  GVRHGE  IR SD  S+R +MK K R+  +   + ++VNFVIFVV+ +SVLKSI+   DG      +Q I+E+F  P LSF+DD PVVV+THGDLLS++DR R RV+LGE LGI P KQIFDIP                                  E+    TELTI+DMLRYSLEHADRNLP K W ++ +
Sbjct:   25 DAHQRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSLILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCLYDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRLVNFVIFVVNGLSVLKSIDSCDDGASQFY-IQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSLSDRARVRVHLGEHLGISPGKQIFDIP----------------------------------ESCGKATELTIIDMLRYSLEHADRNLPCKGWFLDKI 329          
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: A0A067FS20_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015952mg PE=4 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 1.074e-122
Identity = 204/360 (56.67%), Postives = 242/360 (67.22%), Query Frame = 3
Query:  381 HKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQM---VNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLIC 1451
             +RR  V++EVLQSYDQLR R  SL +AK K+LSY PG WIENVGG  LSDYDVPKTTSLLLIGPKG GKSSLVN+IS+VFE+D FA ERAQ++YN SVGDGTY+LQ Y IPRGS SF LYD+R L+D  S+NINMI+ W+  GVRHGE VIR+SD SSLR +M+ K  ++    C P +   VNFVIFVVD ++VLKS+EGD   +    Q+++  F  P LSF+DDKPVVV+THGDLLS+ DR R R YLGELLGIPPAKQIFDIP                                  E+ DP  EL IVDMLRY LEHADRNL  K+    N      +MA +  + V    +I 
Sbjct:   47 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG---CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP----------------------------------ESSDPENELIIVDMLRYCLEHADRNLSCKS-CARNKGFRVSVMAFLNLLLVLGIAIIA 368          
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: B9SYL4_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1416890 PE=4 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 2.996e-122
Identity = 207/398 (52.01%), Postives = 267/398 (67.09%), Query Frame = 3
Query:  267 RDYLRMKAEDGKNESDR------LFLEEFDKMGPQSSSP---DFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVF 1433
            +D +++    GK++ +R      L   EF+++G +  SP   + EA  +++ K +KE+LQSYDQLR R++SL+EAK K+LSY PG W E VGG KLSDY+VPKTT+LLL+GP+G GKSSLVN+IS+VF+DD FAPERAQ+SYNPS G+GTY+LQ YMIP  S SFCLYD+RG  D + +NI M++ WM  GV HGE  +RK DDSSLR +MK K R    +  + + VNFVIFVV+ ++VLKS+  +  +      MI+  F  P  SFKDDKPVVV+THGDLLS++DR R RV+LGELLGIPPAKQIFDIP                                  E+ DPVTELTI+DMLRYSLEHAD NLP ++ V E V    +I +   C+ +F
Sbjct:   24 QDVMQLYHPSGKHDVERVNEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQLRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRISKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEMLKYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSMGSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPPAKQIFDIP----------------------------------ESCDPVTELTIIDMLRYSLEHADNNLP-QDTVAEKV--HRVIGSLYACVHLF 384          
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: A0A059AVZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00756 PE=4 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 2.905e-118
Identity = 195/369 (52.85%), Postives = 245/369 (66.40%), Query Frame = 3
Query:  354 SSSPDFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLICKAC 1460
            SS+ + E Y +RR   Y+EVL+SYD  RV  +SL  AK K+LSY PG WIE VGG +  DY+VP+TTSL+LIGP+G GKSSLVN++S++ EDDNFA ERAQ+SYNPSVGDGTY+LQ YMIPRGS SFCLYD+R L+   SE+  +I+ WM  GVRHGE VIR+SD+ SLR++M+ K R     F   + VNFVIFVV+ ++VLKS++ +        Q+I++ +  P LSFKDDKPVVV+THGDLLS  +R R RVYLGEL GIPP KQIFDIP                                  +N D +T+ TIVDMLRYSLEHADRNLP K WV++     P+  +    +A+     I  AC
Sbjct:   66 SSALESEIYLRRRSSAYREVLESYDTSRVPIESLGRAKSKILSYHPGAWIEEVGGTRSFDYNVPQTTSLVLIGPRGSGKSSLVNRMSKLLEDDNFASERAQVSYNPSVGDGTYFLQEYMIPRGSTSFCLYDTRSLSMDPSEDNKIIKRWMTKGVRHGELVIRESDNWSLRKRMRCKARWGGHPFSVIRRVNFVIFVVNGLTVLKSMDNNHDGQSQYTQLIADTYNCPYLSFKDDKPVVVVTHGDLLSNPERARVRVYLGELCGIPPTKQIFDIP----------------------------------DNSDLLTQFTIVDMLRYSLEHADRNLPRKTWVLKREWRVPV--SACLYLALIVGIAIIAAC 398          
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: M5VIW9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003940mg PE=4 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 5.768e-118
Identity = 207/401 (51.62%), Postives = 259/401 (64.59%), Query Frame = 3
Query:  267 RDYLRMKAEDGKNES-DRLFLEEFDKMGPQ--SSSPDFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLICKAC 1460
            R+ L M  +D    + +   L E D +  +  S+S DFE   KRR+ VY+E+L S D LR+R K L EAK KVLSY PG WIE+VG  KL DYDVPKTT++LL+GPKG GKSSLVN+IS+VFEDD  A ERAQ+SYN SVGDGT++LQ YMIPR S SFCLYD+R L D + ENI ++Q+WM NGVR GE VIR SD  SLR  M  K R+  +     + VNFVIFVV+ +SVLK+IE D   +    QMI+  F  P L+FKDDKP+VV+THGDLLS   R R RV+LGELLGIPPA Q+FDIP                                  E+ DPVTEL IVDMLRYSLE A++NLP+K  V     L+ +++  +  +A+  + +  +AC
Sbjct:   32 RNDLSMNVKDAAEGTLNGSVLGELDSVDSRFSSASLDFEVKQKRRESVYREILLSNDGLRIRGKGLEEAKIKVLSYTPGAWIESVGAVKLRDYDVPKTTTVLLVGPKGSGKSSLVNRISKVFEDDKSASERAQVSYNSSVGDGTFFLQEYMIPRCSTSFCLYDTRSLCDDSHENIKILQHWMKNGVRQGELVIRDSDSQSLRTMMMCKARDDGYLSSEIRKVNFVIFVVNGLSVLKAIESDEDAETRYTQMIASAFNCPYLAFKDDKPLVVVTHGDLLSPVQRARVRVHLGELLGIPPATQVFDIP----------------------------------ESSDPVTELAIVDMLRYSLERAEKNLPHKRKVPTMSLLSGMLLLVILGIAINIWCMNYQAC 398          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
F6HRH6_VITVI6.307e-12355.88Putative uncharacterized protein OS=Vitis vinifera... [more]
A0A067FS20_CITSI1.074e-12256.67Uncharacterized protein OS=Citrus sinensis GN=CISI... [more]
B9SYL4_RICCO2.996e-12252.01ATP binding protein, putative OS=Ricinus communis ... [more]
A0A059AVZ7_EUCGR2.905e-11852.85Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
M5VIW9_PRUPE5.768e-11851.62Uncharacterized protein OS=Prunus persica GN=PRUPE... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 25..103
e-value: 6.4E-5
score: 21.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 215..288
e-value: 2.2E-8
score: 33.1
coord: 104..180
e-value: 2.2E-8
score: 33.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 191..288
coord: 90..163
NoneNo IPR availablePANTHERPTHR14241INTERFERON-INDUCED PROTEIN 44coord: 1..299
NoneNo IPR availablePANTHERPTHR14241:SF10VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN DDB_G0292188coord: 1..299

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001187 ID=g.raimondii_cottongen_reftransV1_0001187; Name=g.raimondii_cottongen_reftransV1_0001187; organism=Gossypium raimondii; type=contig; length=2100bp
GGTTTTTTTCACCAGGGGATATAGTTTACTTTCTCCTGCAAAATATGGGT
GGTGAGACGATCATCCCTCCTACCTTCACTTCTGAGGAAGAATACTCAGT
AGACCAAGATTTCTCACTTCCATCATTGTCTTCCCTAAACCCCACTTTGC
TTAGGTACTCTTTTTTTCCCCCCCTGTTTTAAAGGATGAAATGAGTTTTA
GCCTATATAATTTTCTTGGGATCAAGTGAAAAATGTTGAATTTGATTATG
TGGTTTCATATGAGCAAGGGATTACTTGAGAATGAAGGCTGAAGATGGAA
AAAATGAAAGCGATAGGTTGTTTTTAGAAGAATTTGATAAGATGGGTCCT
CAGTCATCTTCTCCGGACTTTGAAGCTTATCACAAGAGGAGACAGAAGGT
TTACAAAGAGGTTTTGCAGAGTTATGATCAATTGCGGGTTCGAAGTAAGA
GTCTAAACGAGGCAAAGTACAAGGTTTTGAGTTATTTCCCAGGAACATGG
ATTGAGAATGTTGGTGGCAAGAAACTGAGTGATTACGATGTTCCAAAAAC
AACATCACTCCTTTTGATTGGTCCAAAAGGGTGTGGAAAAAGTAGTCTTG
TCAATAAAATTTCCAGGGTGTTTGAGGATGACAATTTTGCACCAGAACGT
GCTCAAATATCATATAATCCATCTGTTGGAGATGGGACCTACTATCTTCA
AGGATACATGATCCCAAGAGGTTCAGCTTCATTCTGTCTTTATGATTCCA
GGGGCTTGGCCGATGGCACCTCTGAAAACATTAATATGATTCAAAATTGG
ATGAATAATGGTGTTCGTCATGGGGAACCTGTTATCAGGAAATCTGATGA
TTCCAGTTTAAGGAGAAAAATGAAATTTAAACCACGAGAGCTAGATTGGA
AGTTCTGCAGGCCCCAGATGGTTAATTTTGTCATTTTTGTTGTTGATGCG
GTTTCTGTTTTGAAATCCATTGAGGGTGATGGCGTGGAAGACTTACTCTG
CTTGCAGATGATCAGCGAGGTTTTCAAGCAACCGTGCTTATCATTTAAAG
ATGATAAACCTGTTGTCGTTATCACACATGGAGATTTACTTTCAATTGCT
GACCGTGTTCGTGCCCGTGTTTATTTGGGAGAGCTGCTTGGTATTCCACC
TGCAAAACAAATTTTTGATATTCCAGGTGACTTCATCAAGTTATTTACAT
TTTCTGCTTTGTAATTTATTGATTACTTTTTGCCATCCCATTATTTATGC
AATTGAGTGTAAACCTTTAAGTTTGCAGAAAACCATGATCCAGTAACAGA
GTTGACAATTGTTGATATGCTGCGCTACTCACTTGAGCACGCAGATCGAA
ATCTTCCGTACAAGAACTGGGTAATGGAAAATGTATGTCTTGCACCAATA
ATAATGGCTAAGATGTTCTGCATGGCTGTATTTTCTTTTACTCTGATTTG
TAAAGCATGCTGATAACTTGTAAATGCTTGCTTCTTTGGCTTGGTTCATT
ATGCTTACAAAATTTCTTGGCAAGTGTTTTGCTCGAATCCAAAATATTTG
TTGTTATCATTACGCTTTGTCAAGCAAGTCATTTAGCTTTTGTATCCTTA
CTGTACTTGCAAGGCATTCTTAGTTATTCATGATGTCTATGTATGATTCC
TCAGTGGTGATACGAGGTTTTGCGCAAGCAAGCATATTGCTTGGTTGATT
GTTTTGTTAAAGACTTCTTAGTAATGGCTATAATGATCACATGCAGGTTC
GCAAAGTCCCTCTATTTTCATGGTTATGTGTGCTAGCAATGCTGCTGGGT
ATTGCCTCAGGAATGGCTTGCATGCGATATTTGCATATGAGGCATCCTCG
GAAATCAGAATTTAAGATAGTTTGGCATACAATCCGGCATATATGGTAAA
GATAAAATAAAGTTGGCTTTCTTTATTTGGTTTGATACCCTTCAACCCAG
TTCATAAACTACACGAATGCATTCTATACGAATGCATATGTAAATGGTTT
GATCTTTTTGATGTATGTGGAACTTAAGTTTATTGGAATAAAGCTTTGGT
ATTATTTGGGGGTTGACCTTTACAGCTTTGGTAGCCAGCGTTGATATCAG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase