g.raimondii_cottongen_reftransV1_0001187, g.raimondii_cottongen_reftransV1_0001187 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: F6HRH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0231g00050 PE=4 SV=1) HSP 1 Score: 382.874 bits (982), Expect = 6.307e-123 Identity = 190/340 (55.88%), Postives = 241/340 (70.88%), Query Frame = 3 Query: 372 EAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEG--DGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENV 1385 +A+ +RR VY ++LQSYD +R+R+ +L +AK ++LSY PG WIE GG K SDY+VP+TTSL+L+GPKG GKSSL+NKISRVFEDD FAPERAQ+SYN SVGDGTY+LQ YMIPRGS SFCLYD+RGL+D +S+N+ M+++W+ GVRHGE IR SD S+R +MK K R+ + + ++VNFVIFVV+ +SVLKSI+ DG +Q I+E+F P LSF+DD PVVV+THGDLLS++DR R RV+LGE LGI P KQIFDIP E+ TELTI+DMLRYSLEHADRNLP K W ++ + Sbjct: 25 DAHQRRRSLVYSQILQSYDDVRIRTNALEKAKSRILSYTPGAWIEMSGGMKFSDYNVPETTSLILVGPKGSGKSSLINKISRVFEDDKFAPERAQVSYNLSVGDGTYFLQEYMIPRGSTSFCLYDTRGLSDVSSDNMQMLKHWITKGVRHGELAIRNSDSPSIRARMKCKARQSGYNSSKTRLVNFVIFVVNGLSVLKSIDSCDDGASQFY-IQTIAEMFCCPYLSFRDDMPVVVVTHGDLLSLSDRARVRVHLGEHLGISPGKQIFDIP----------------------------------ESCGKATELTIIDMLRYSLEHADRNLPCKGWFLDKI 329
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: A0A067FS20_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g015952mg PE=4 SV=1) HSP 1 Score: 383.645 bits (984), Expect = 1.074e-122 Identity = 204/360 (56.67%), Postives = 242/360 (67.22%), Query Frame = 3 Query: 381 HKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQM---VNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLIC 1451 +RR V++EVLQSYDQLR R SL +AK K+LSY PG WIENVGG LSDYDVPKTTSLLLIGPKG GKSSLVN+IS+VFE+D FA ERAQ++YN SVGDGTY+LQ Y IPRGS SF LYD+R L+D S+NINMI+ W+ GVRHGE VIR+SD SSLR +M+ K ++ C P + VNFVIFVVD ++VLKS+EGD + Q+++ F P LSF+DDKPVVV+THGDLLS+ DR R R YLGELLGIPPAKQIFDIP E+ DP EL IVDMLRY LEHADRNL K+ N +MA + + V +I Sbjct: 47 QRRRDAVFREVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG---CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQIFDIP----------------------------------ESSDPENELIIVDMLRYCLEHADRNLSCKS-CARNKGFRVSVMAFLNLLLVLGIAIIA 368
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: B9SYL4_RICCO (ATP binding protein, putative OS=Ricinus communis GN=RCOM_1416890 PE=4 SV=1) HSP 1 Score: 383.259 bits (983), Expect = 2.996e-122 Identity = 207/398 (52.01%), Postives = 267/398 (67.09%), Query Frame = 3 Query: 267 RDYLRMKAEDGKNESDR------LFLEEFDKMGPQSSSP---DFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVF 1433 +D +++ GK++ +R L EF+++G + SP + EA +++ K +KE+LQSYDQLR R++SL+EAK K+LSY PG W E VGG KLSDY+VPKTT+LLL+GP+G GKSSLVN+IS+VF+DD FAPERAQ+SYNPS G+GTY+LQ YMIP S SFCLYD+RG D + +NI M++ WM GV HGE +RK DDSSLR +MK K R + + + VNFVIFVV+ ++VLKS+ + + MI+ F P SFKDDKPVVV+THGDLLS++DR R RV+LGELLGIPPAKQIFDIP E+ DPVTELTI+DMLRYSLEHAD NLP ++ V E V +I + C+ +F Sbjct: 24 QDVMQLYHPSGKHDVERVNEEYGLAFGEFEEVGCRVLSPTSLEVEANQRKKWKAFKELLQSYDQLRSRAESLDEAKSKILSYTPGGWKEKVGGMKLSDYNVPKTTTLLLVGPRGSGKSSLVNRISKVFDDDKFAPERAQVSYNPSAGEGTYFLQEYMIPGCSTSFCLYDTRGFFDNSYDNIEMLKYWMTRGVCHGELTVRKCDDSSLRTRMKCKVRYNGSQSKKNRTVNFVIFVVNGLAVLKSMGSEVEKGNQYTDMIASAFNCPYASFKDDKPVVVVTHGDLLSLSDRTRIRVHLGELLGIPPAKQIFDIP----------------------------------ESCDPVTELTIIDMLRYSLEHADNNLP-QDTVAEKV--HRVIGSLYACVHLF 384
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: A0A059AVZ7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H00756 PE=4 SV=1) HSP 1 Score: 373.244 bits (957), Expect = 2.905e-118 Identity = 195/369 (52.85%), Postives = 245/369 (66.40%), Query Frame = 3 Query: 354 SSSPDFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLICKAC 1460 SS+ + E Y +RR Y+EVL+SYD RV +SL AK K+LSY PG WIE VGG + DY+VP+TTSL+LIGP+G GKSSLVN++S++ EDDNFA ERAQ+SYNPSVGDGTY+LQ YMIPRGS SFCLYD+R L+ SE+ +I+ WM GVRHGE VIR+SD+ SLR++M+ K R F + VNFVIFVV+ ++VLKS++ + Q+I++ + P LSFKDDKPVVV+THGDLLS +R R RVYLGEL GIPP KQIFDIP +N D +T+ TIVDMLRYSLEHADRNLP K WV++ P+ + +A+ I AC Sbjct: 66 SSALESEIYLRRRSSAYREVLESYDTSRVPIESLGRAKSKILSYHPGAWIEEVGGTRSFDYNVPQTTSLVLIGPRGSGKSSLVNRMSKLLEDDNFASERAQVSYNPSVGDGTYFLQEYMIPRGSTSFCLYDTRSLSMDPSEDNKIIKRWMTKGVRHGELVIRESDNWSLRKRMRCKARWGGHPFSVIRRVNFVIFVVNGLTVLKSMDNNHDGQSQYTQLIADTYNCPYLSFKDDKPVVVVTHGDLLSNPERARVRVYLGELCGIPPTKQIFDIP----------------------------------DNSDLLTQFTIVDMLRYSLEHADRNLPRKTWVLKREWRVPV--SACLYLALIVGIAIIAAC 398
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Match: M5VIW9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003940mg PE=4 SV=1) HSP 1 Score: 376.326 bits (965), Expect = 5.768e-118 Identity = 207/401 (51.62%), Postives = 259/401 (64.59%), Query Frame = 3 Query: 267 RDYLRMKAEDGKNES-DRLFLEEFDKMGPQ--SSSPDFEAYHKRRQKVYKEVLQSYDQLRVRSKSLNEAKYKVLSYFPGTWIENVGGKKLSDYDVPKTTSLLLIGPKGCGKSSLVNKISRVFEDDNFAPERAQISYNPSVGDGTYYLQGYMIPRGSASFCLYDSRGLADGTSENINMIQNWMNNGVRHGEPVIRKSDDSSLRRKMKFKPRELDWKFCRPQMVNFVIFVVDAVSVLKSIEGDGVEDLLCLQMISEVFKQPCLSFKDDKPVVVITHGDLLSIADRVRARVYLGELLGIPPAKQIFDIPGDFIKLFTFSAL*FIDYFLPSHYLCN*V*TFKFAENHDPVTELTIVDMLRYSLEHADRNLPYKNWVMENVCLAPIIMAKMFCMAVFSFTLICKAC 1460 R+ L M +D + + L E D + + S+S DFE KRR+ VY+E+L S D LR+R K L EAK KVLSY PG WIE+VG KL DYDVPKTT++LL+GPKG GKSSLVN+IS+VFEDD A ERAQ+SYN SVGDGT++LQ YMIPR S SFCLYD+R L D + ENI ++Q+WM NGVR GE VIR SD SLR M K R+ + + VNFVIFVV+ +SVLK+IE D + QMI+ F P L+FKDDKP+VV+THGDLLS R R RV+LGELLGIPPA Q+FDIP E+ DPVTEL IVDMLRYSLE A++NLP+K V L+ +++ + +A+ + + +AC Sbjct: 32 RNDLSMNVKDAAEGTLNGSVLGELDSVDSRFSSASLDFEVKQKRRESVYREILLSNDGLRIRGKGLEEAKIKVLSYTPGAWIESVGAVKLRDYDVPKTTTVLLVGPKGSGKSSLVNRISKVFEDDKSASERAQVSYNSSVGDGTFFLQEYMIPRCSTSFCLYDTRSLCDDSHENIKILQHWMKNGVRQGELVIRDSDSQSLRTMMMCKARDDGYLSSEIRKVNFVIFVVNGLSVLKAIESDEDAETRYTQMIASAFNCPYLAFKDDKPLVVVTHGDLLSPVQRARVRVHLGELLGIPPATQVFDIP----------------------------------ESSDPVTELAIVDMLRYSLERAEKNLPHKRKVPTMSLLSGMLLLVILGIAINIWCMNYQAC 398 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.raimondii_cottongen_reftransV1_0001187 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001187 ID=g.raimondii_cottongen_reftransV1_0001187; Name=g.raimondii_cottongen_reftransV1_0001187; organism=Gossypium raimondii; type=contig; length=2100bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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