g.raimondii_cottongen_reftransV1_0001186, g.raimondii_cottongen_reftransV1_0001186 (contig) Gossypium raimondii

Overview


Name	g.raimondii_cottongen_reftransV1_0001186
Unique Name	g.raimondii_cottongen_reftransV1_0001186
Type	contig
Organism	Gossypium raimondii (Gossypium raimondii)
Sequence length	5118

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr05	chromosome	g.raimondii_cottongen_reftransV1_0001186:1..5118 . Chr05:28162931..28173058 -		n/a

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium raimondii CottonGen RefTrans V1	2016-11-09
InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt	2016-11-09

Homology

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BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2RM27_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G138800 PE=4 SV=1)

HSP 1 Score: 916.376 bits (2367), Expect = 0.000e+0
Identity = 464/495 (93.74%), Postives = 477/495 (96.36%), Query Frame = -3

Query: 3593 NIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5077
            NI +VGS+VRDIGDPCLS S IK  KMLK EKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:   24 NIQKVGSVVRDIGDPCLSHSSIKVGKMLKQEKWQAIFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKIDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 518

HSP 2 Score: 235.728 bits (600), Expect = 2.426e-61
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+
Sbjct:  518 MMWAADFDESASCDLEDICLEALVVQLPRDLGEETREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNILQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKL 675

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2T7R1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G138800 PE=4 SV=1)

HSP 1 Score: 910.598 bits (2352), Expect = 0.000e+0
Identity = 464/498 (93.17%), Postives = 478/498 (95.98%), Query Frame = -3

Query: 3593 NIHRVGSIVRDIGDPCLSQSPIK---ANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5077
            NI +VGS+VRDIGDPCLS S IK   + KMLK EKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:   24 NIQKVGSVVRDIGDPCLSHSSIKVVFSCKMLKQEKWQAIFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKIDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 521

HSP 2 Score: 236.113 bits (601), Expect = 2.472e-61
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+
Sbjct:  521 MMWAADFDESASCDLEDICLEALVVQLPRDLGEETREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNILQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKL 678

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0B0PW43_GOSAR (Tbc1d15 OS=Gossypium arboreum GN=F383_16157 PE=4 SV=1)

HSP 1 Score: 897.116 bits (2317), Expect = 0.000e+0
Identity = 457/503 (90.85%), Postives = 475/503 (94.43%), Query Frame = -3

Query: 3593 NIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRI--------VVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5077
            NI +VGS+VRDIGDPC+S S IK  KMLKPEKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDS Y+D+RVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRG DCNGSDFITECDFDFPPLPVTDLFEKSED+KEFDANEEV+SAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQE AAQEERVSEWLWTLHRI        VVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:   24 NIQKVGSVVRDIGDPCVSHSSIKVGKMLKPEKWQATFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSSYIDRRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGVDCNGSDFITECDFDFPPLPVTDLFEKSEDEKEFDANEEVFSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQEGAAQEERVSEWLWTLHRIADRILILSVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKVDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 526

HSP 2 Score: 235.343 bits (599), Expect = 4.233e-61
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+
Sbjct:  526 MMWAADFDESASCDLEDICLEALVVQLPRDLGEEIREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNLLQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKL 683

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0B0PRJ2_GOSAR (Tbc1d15 OS=Gossypium arboreum GN=F383_16157 PE=4 SV=1)

HSP 1 Score: 896.345 bits (2315), Expect = 0.000e+0
Identity = 457/503 (90.85%), Postives = 475/503 (94.43%), Query Frame = -3

Query: 3593 NIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRI--------VVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5077
            NI +VGS+VRDIGDPC+S S IK  KMLKPEKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDS Y+D+RVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRG DCNGSDFITECDFDFPPLPVTDLFEKSED+KEFDANEEV+SAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQE AAQEERVSEWLWTLHRI        VVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:   24 NIQKVGSVVRDIGDPCVSHSSIKVGKMLKPEKWQATFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSSYIDRRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGVDCNGSDFITECDFDFPPLPVTDLFEKSEDEKEFDANEEVFSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQEGAAQEERVSEWLWTLHRIADRILILSVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKVDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 526

HSP 2 Score: 238.424 bits (607), Expect = 7.673e-62
Identity = 123/205 (60.00%), Postives = 147/205 (71.71%), Query Frame = -1

Query: 2659 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKVSNCIIFLLWKYEREVKCKFN-PFLCFAVNPPTFCFFLLLSLMTVQRH 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+         K + ++  KF   FLC+ +    F    L+      RH
Sbjct:  526 MMWAADFDESASCDLEDICLEALVVQLPRDLGEEIREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNLLQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKLIKSKSHADRKIDLDMAWKFMVGFLCWHIKQSAFAIQRLVQFF--HRH 728

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2RM32_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G138800 PE=4 SV=1)

HSP 1 Score: 876.315 bits (2263), Expect = 0.000e+0
Identity = 445/469 (94.88%), Postives = 456/469 (97.23%), Query Frame = -3

Query: 3593 MLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 4999
            MLK EKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:    1 MLKQEKWQAIFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKIDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 469

HSP 2 Score: 236.498 bits (602), Expect = 7.269e-62
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+
Sbjct:  469 MMWAADFDESASCDLEDICLEALVVQLPRDLGEETREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNILQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKL 626

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2VLZ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G138800 PE=4 SV=1)

HSP 1 Score: 875.544 bits (2261), Expect = 0.000e+0
Identity = 446/471 (94.69%), Postives = 457/471 (97.03%), Query Frame = -3

Query: 3593 NKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5005
             KMLK EKWQA FDNEGKV  F KVLKLIILGGVDPSIR EVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDS+L+FY+D RN+ARMSDILAVYAWVD  TGYCQGMSDLLSPFVV+FEDNADAFWCFEMLIRRMRENF+++GPTGVMKQLQALWHILE TDREIF HLS IGAESLHFAFPMLLVLFRRELSFN++L MWE+
Sbjct:   38 GKMLKQEKWQAIFDNEGKVSGFQKVLKLIILGGVDPSIRPEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSKEAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNADSAAYDSCSSSTSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMESNVSSSLSKNVSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSHLDFYKDTRNLARMSDILAVYAWVDPTTGYCQGMSDLLSPFVVLFEDNADAFWCFEMLIRRMRENFKIDGPTGVMKQLQALWHILEFTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNESLRMWEM 508

HSP 2 Score: 235.728 bits (600), Expect = 2.469e-61
Identity = 113/158 (71.52%), Postives = 131/158 (82.91%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDES +C+LE ICLEAL VQ+P D   E  EEN E+G+    G LQ KHSLSEN G K+A+ + FCGLTRNF S+N+ LQIC +VS TRKGDD+LPVFCVAAILIMNRQK+IKET SIDDMIKIFNDKLLK+HV+RCVG+AI+LRKKY  K+
Sbjct:  508 MMWAADFDESASCDLEDICLEALVVQLPRDLGEETREENPESGDDGVKGSLQSKHSLSENAGFKSAAAHRFCGLTRNFLSKNNILQICGLVSSTRKGDDNLPVFCVAAILIMNRQKIIKETHSIDDMIKIFNDKLLKIHVKRCVGSAIKLRKKYLYKL 665

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A061EIE7_THECC (Ypt/Rab-GAP domain of gyp1p superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_019958 PE=4 SV=1)

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 414/500 (82.80%), Postives = 441/500 (88.20%), Query Frame = -3

Query: 3593 NIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSK-----EAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5077
            NI RVGSIVRDIGDPCLSQSPIK +KMLKPEKWQA FDNEGKV  F K L+LI+LGGVDPSIR EVWEFLLGCYALGSTAD+RRQLR ARRERYKDL+KQCQTMHSSIGTGSLAY VGSKVMDMRT SK     E+KVECR+ASTDDTDK EKYSDLGNN +D  Y DQR   S+  DL SVR N  +AAYDSC  STS   G CSSK GG+C+GS+FITEC FDFPPLPVTDLFEKSEDKKEFDANEE YSAQ KL+FEDDNMHSFQINNNADLIMESNVS SLS N+SC +NSEI+L+ + D YEPVL  N+VSYKTETVNRL IS VPETP VNAT SQE AA +ERVSEWLWTLHRIVVDVVRTDS+LEFYED RN+ARMSDILAVYAWVD ATGYCQGMSDLLSPFVV+FEDNADAFWCFEML+RRMRENFQMEGPTGVMKQLQALWHILELTDREIF HLS IGAESLHFAFPMLLVLFRRELSFN+AL MWE+
Sbjct:   27 NIQRVGSIVRDIGDPCLSQSPIKVSKMLKPEKWQATFDNEGKVSGFQKALRLIVLGGVDPSIRPEVWEFLLGCYALGSTADYRRQLRTARRERYKDLVKQCQTMHSSIGTGSLAYNVGSKVMDMRTSSKDGGKRESKVECRQASTDDTDKTEKYSDLGNNGTDKSYADQRECCSDITDLVSVRGNTQTAAYDSCFLSTSGLYGRCSSKIGGECHGSEFITECHFDFPPLPVTDLFEKSEDKKEFDANEEGYSAQCKLIFEDDNMHSFQINNNADLIMESNVSPSLSNNISCPFNSEIQLI-HPDAYEPVLTSNNVSYKTETVNRLRISDVPETPLVNATISQEGAANDERVSEWLWTLHRIVVDVVRTDSHLEFYEDTRNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRENFQMEGPTGVMKQLQALWHILELTDREIFAHLSNIGAESLHFAFPMLLVLFRRELSFNEALRMWEM 525

HSP 2 Score: 268.085 bits (684), Expect = 4.544e-72
Identity = 127/158 (80.38%), Postives = 140/158 (88.61%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDESV CNLE+ICLEAL VQ+P DS +E  EEN+ENGN     GLQ KHSLSEN+GIK+AS Y FCGLTRNFWSRNDRLQICNVVS TRKGDDDLPVFCVAAILIMNRQK+I+ETRSIDDMIKIFNDKLLK+HV+RC+G AI+LRKKY  K+
Sbjct:  525 MMWAADFDESVTCNLEEICLEALIVQLPRDSGSEIGEENSENGNDGVKDGLQLKHSLSENDGIKSASAYPFCGLTRNFWSRNDRLQICNVVSSTRKGDDDLPVFCVAAILIMNRQKIIRETRSIDDMIKIFNDKLLKIHVKRCIGAAIKLRKKYLYKL 682

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2RDS9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G126100 PE=4 SV=1)

HSP 1 Score: 779.63 bits (2012), Expect = 0.000e+0
Identity = 418/513 (81.48%), Postives = 447/513 (87.13%), Query Frame = -3

Query: 3593 YGKXXXXXXXXXVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSK-----EAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5116
            YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTAD+RRQLR ARR+ Y DLI+QCQ+MHSSIGTGSLAYPVGSKVMDMR+ SK     E+KV+ R+ASTD TD RE+ S LG+NC++ LY DQ     +  D+ SVR NA +AA+DSC   TS PCG  S K   DCNGSDF T  DFDFPPLP+TDLFEK+ED+KEFDANE   +A+YK+  EDDNMHSFQINNNADLIMESNV  SLSK++S  YNSEIELV   D YEPVLR N VS+K ETVNRL I  VP+T  VNA+ SQE  A +E VSEWLWTLH IVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWE+
Sbjct:   12 YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADYRRQLRTARRKHYNDLIQQCQSMHSSIGTGSLAYPVGSKVMDMRSASKDEQRRESKVDNRQASTDVTDNREEDSHLGDNCTNRLYADQGKGC-DFADIISVRGNAHTAAHDSCFLPTSGPCGRYSPKIRRDCNGSDFSTGSDFDFPPLPLTDLFEKNEDEKEFDANEGENAAKYKVTLEDDNMHSFQINNNADLIMESNVPPSLSKSISLPYNSEIELVP-PDAYEPVLRSNIVSHKAETVNRLRILDVPKTRLVNASGSQEGTAHDETVSEWLWTLHLIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEM 522

HSP 2 Score: 330.102 bits (845), Expect = 1.715e-93
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCK+
Sbjct:  522 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKL 679

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0D2NBN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G126100 PE=4 SV=1)

HSP 1 Score: 777.704 bits (2007), Expect = 0.000e+0
Identity = 418/513 (81.48%), Postives = 447/513 (87.13%), Query Frame = -3

Query: 3593 YGKXXXXXXXXXVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSK-----EAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5116
            YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTAD+RRQLR ARR+ Y DLI+QCQ+MHSSIGTGSLAYPVGSKVMDMR+ SK     E+KV+ R+ASTD TD RE+ S LG+NC++ LY DQ     +  D+ SVR NA +AA+DSC   TS PCG  S K   DCNGSDF T  DFDFPPLP+TDLFEK+ED+KEFDANE   +A+YK+  EDDNMHSFQINNNADLIMESNV  SLSK++S  YNSEIELV   D YEPVLR N VS+K ETVNRL I  VP+T  VNA+ SQE  A +E VSEWLWTLH IVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWE+
Sbjct:   12 YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADYRRQLRTARRKHYNDLIQQCQSMHSSIGTGSLAYPVGSKVMDMRSASKDEQRRESKVDNRQASTDVTDNREEDSHLGDNCTNRLYADQGKGC-DFADIISVRGNAHTAAHDSCFLPTSGPCGRYSPKIRRDCNGSDFSTGSDFDFPPLPLTDLFEKNEDEKEFDANEGENAAKYKVTLEDDNMHSFQINNNADLIMESNVPPSLSKSISLPYNSEIELVP-PDAYEPVLRSNIVSHKAETVNRLRILDVPKTRLVNASGSQEGTAHDETVSEWLWTLHLIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEM 522

HSP 2 Score: 463.381 bits (1191), Expect = 6.503e-140
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = -1

Query: 2611 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKVSNCIIFLLWKYEREVKCKFNPFLCFAVNPPTFCFFLLLSLMTVQRHCHFGNFNTAMVLELVK 3270
            MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKVSNCIIFLLWKYEREVKCKFNPFLCFAVNPPTFCFFLLLSLMTVQRHCHFGNFNTAMVLELVK
Sbjct:  522 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKVSNCIIFLLWKYEREVKCKFNPFLCFAVNPPTFCFFLLLSLMTVQRHCHFGNFNTAMVLELVK 741

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Match: A0A0B0PM25_GOSAR (TBC1 domain family member 15 OS=Gossypium arboreum GN=F383_13451 PE=4 SV=1)

HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 410/513 (79.92%), Postives = 440/513 (85.77%), Query Frame = -3

Query: 3593 YGKXXXXXXXXXVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADHRRQLRIARRERYKDLIKQCQTMHSSIGTGSLAYPVGSKVMDMRTPSK-----EAKVECREASTDDTDKREKYSDLGNNCSDSLYVDQRVNVSNSGDLTSVRRNXXXXXXXXXXXXXSVPCGPCSSKRGGDCNGSDFITECDFDFPPLPVTDLFEKSEDKKEFDANEEVYSAQYKLMFEDDNMHSFQINNNADLIMEXXXXXXXXXXXSCRYNSEIELVTYSDDYEPVLRPNSVSYKTETVNRLSISSVPETPFVNATRSQERAAQEERVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDRATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRMRENFQMEGPTGVMKQLQALWHILELTDREIFIHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEV 5116
            YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTAD+RRQLR ARR+ Y DL++QCQ+MHSSIGTGSLAYPVGSKVMDMR+ SK     E+KV+ R+ASTDDTD RE+ SDLG+NC++ LY DQ     +  D+ SVR NA +AA+DSC   TS P G  S K   DCNGSDF T  DFDFPPLP+TDLFEK+ED+KEFDANE   +A YK+  EDDNMHSFQINNNADLIMES V  SLSK++S  YNSEIELV   D YEPVLR N  S+K ETVNRL IS VP++  VNA+ SQE  A +E VSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVD ATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRM     MEGPTGVMKQLQALWHILELTDREIF HLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWE+
Sbjct:   12 YGKAAVAAAAGAVNIHRVGSIVRDIGDPCLSQSPIKANKMLKPEKWQAAFDNEGKVVDFHKVLKLIILGGVDPSIRSEVWEFLLGCYALGSTADYRRQLRTARRKHYNDLLQQCQSMHSSIGTGSLAYPVGSKVMDMRSASKDEQRRESKVDNRQASTDDTDNREEDSDLGDNCTNRLYADQGKGC-DFADIISVRGNAHTAAHDSCFLPTSGPSGRSSPKIRRDCNGSDFSTGSDFDFPPLPLTDLFEKNEDEKEFDANEGENAAIYKVTLEDDNMHSFQINNNADLIMESKVPPSLSKSISLPYNSEIELVP-PDAYEPVLRSNIASHKAETVNRLRISDVPKSQLVNASGSQEGTAHDETVSEWLWTLHRIVVDVVRTDSNLEFYEDKRNVARMSDILAVYAWVDPATGYCQGMSDLLSPFVVIFEDNADAFWCFEMLIRRM-----MEGPTGVMKQLQALWHILELTDREIFTHLSKIGAESLHFAFPMLLVLFRRELSFNDALCMWEM 517

HSP 2 Score: 318.931 bits (816), Expect = 1.176e-89
Identity = 152/158 (96.20%), Postives = 154/158 (97.47%), Query Frame = -1

Query: 2797 MMWAADFDESVNCNLEKICLEALTVQVPGDSRAEDEEENTENGNHNAIGGLQFKHSLSENEGIKAASTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVAAILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKV 3270
            MMWAADFDESVNCNLEKICLEALT+QVPGDS AEDEEENTENGN NAIGGLQFKHSLSENEGIKAA TYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVA ILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCK+
Sbjct:  517 MMWAADFDESVNCNLEKICLEALTIQVPGDSGAEDEEENTENGNDNAIGGLQFKHSLSENEGIKAALTYHFCGLTRNFWSRNDRLQICNVVSPTRKGDDDLPVFCVATILIMNRQKLIKETRSIDDMIKIFNDKLLKVHVRRCVGTAIRLRKKYFCKL 674

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.885e-26
Identity = 67/185 (36.22%), Postives = 94/185 (50.81%), Query Frame = 2

Query:  173 TCDNAEAYIRHQVESFYKYDKTIAPKLLRLLYADCFVNGCDASVLLDGPN---SEKTAPQNRGLAGFAFIDKIKTVLEARCPGVVSCADILNLATRDAVHLVCIYLIFLIIK*ISRVFVSYKSLIHII*IQAGAPSYPVYTGRRDGMTSTKDSVDLPSPSISWEASLTYFRSRGLDVLDMTTLLG 718
            TC  AE+ +   V + +  ++T+   LLR+ + DC V GCDAS+L+D      SEK+  +N G+ GF  ID+ K  LE  CP  VSCADI+ +ATRD++ L                              AG P + V TGRRDG+ S    V L  P++S   S+  F+S G +V  M  L+G
Sbjct:   30 TCPPAESIVGRVVFNHWDRNRTVTAALLRMQFHDCVVKGCDASLLIDPTTERPSEKSVGRNAGVRGFEIIDEAKKELELVCPKTVSCADIVTIATRDSIAL------------------------------AGGPKFKVRTGRRDGLRSNPSDVKLLGPTVSVATSIKAFKSIGFNVSTMVALIG 184

HSP 2 Score: 89.3521 bits (220), Expect = 2.118e-17
Identity = 47/140 (33.57%), Postives = 74/140 (52.86%), Query Frame = 2

Query: 1064 FLSGAHSMGRTHCSFIVDRLYNFNDTGKPDPSMKASLLEEMRKLCPPKTKKGQPDPLIFLNPASGSKYSFINSYYSRVLTNEAVLGVDQQLLYNEDTKQITEEFAAGFEDFRRSFALSMSRMGNINVLTGKEGEIRKNCR 1483
             + G H++G  HCS   DR+         DP M + L  +++K C     +G  DP +F++    + +   N  Y +++   A+L +D  L+ +  T+ I  +FA   + F+ SFA +M +MG I VLTG  GEIR NCR
Sbjct:  182 LIGGGHTVGVAHCSLFQDRI--------KDPKMDSKLRAKLKKSC-----RGPNDPSVFMD--QNTPFRVDNEIYRQMIQQRAILRIDDNLIRDGSTRSIVSDFAYNNKLFKESFAEAMQKMGEIGVLTGDSGEIRTNCR 306

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 1.887e-26
Identity = 71/194 (36.60%), Postives = 94/194 (48.45%), Query Frame = 2

Query:  152 HYYKVHNTCDNAEAYIRHQVESFYKYDKTIAPKLLRLLYADCFVNGCDASVLLDGP---NSEKTAPQNRGLAGFAFIDKIKTVLEARCPGVVSCADILNLATRDAVHLVCIYLIFLIIK*ISRVFVSYKSLIHII*IQAGAPSYPVYTGRRDGMTSTKDSV--DLPSPSISWEASLTYFRSRGLDVLDMTTLLG 718
            HY     +C  AE  I   +   Y    ++AP ++RLL+ DCF+ GCDASVLLD      SEK A  N  L GF  ID +K+ LE  CPGVVSCAD+L LA R+AV                              + AG P YP+ TGR+D   + +D    +LP+P  +    L  F  RG +  +  +L G
Sbjct:   69 HYDYYRESCPTAEKIIAKAIRDIYNVTPSVAPPIIRLLFHDCFIEGCDASVLLDADEAHTSEKDASPNLSLKGFDVIDAVKSELENVCPGVVSCADLLVLAAREAV------------------------------LVAGGPFYPLETGRKDSAAAYRDFAEHELPAPDATLSVILQRFSFRGFNERETVSLFG 232

HSP 2 Score: 104.375 bits (259), Expect = 5.302e-22
Identity = 57/168 (33.93%), Postives = 85/168 (50.60%), Query Frame = 2

Query: 1067 LSGAHSMGRTHCSFIVDRLYNFNDTGKPDPSMKASLLEEMRKLCPPKTKKGQPD--PLIFLNPA----------------------------SGSKYSFINSYYSRVLTNEAVLGVDQQLLYNEDTKQITEEFAAGFEDFRRSFALSMSRMGNINVLTGKEGEIRKNC 1480
            L GAHS+G THC+F  +RLYNF+ TGKPDP +    L+E++  CP       P   P I L P+                             G   +F   Y+ R++ N+ ++  DQQL+ +E T+     +A+    FRR FA+SM ++ + NVLTG  G++R +C
Sbjct:  230 LFGAHSIGITHCTFFKNRLYNFSATGKPDPELNPGFLQELKTKCPFSVSTSSPSAPPDIGLPPSLPASDSENSYGMSSGNRNDEVIDLSYNNEGGDENFGTRYFRRLMQNKGLMSSDQQLMGSEVTEMWVRAYASDPLLFRREFAMSMMKLSSYNVLTGPLGQVRTSC 397

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Match: PER56_ARATH (Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.687e-26
Identity = 69/185 (37.30%), Postives = 95/185 (51.35%), Query Frame = 2

Query:  176 CDNAEAYIRHQVESFYKYDKTIAPKLLRLLYADCFVNGCDASVLLDGPNS--EKTAPQNRGLAGFAFIDKIKTVLEARCPGVVSCADILNLATRDAVHLVCIYLIFLIIK*ISRVFVSYKSLIHII*IQAGAPSYPVYTGRRDGMTS--TKDSVDLPSPSISWEASLTYFRSRGLDVLDMTTLLG 718
            C  AE  ++  V    K D+TIA  LLR+ + DCFV GC+ SVLL+  N   EK +  N  L GF  ID +K  LE  CPG+VSC+D+L L  RDA+                              +    PS+ V TGRRDG+ +  T+  ++LPSP  +  + +T F+S+GLD  D+  L G
Sbjct:   41 CPKAELIVKKSVFEAVKNDRTIAAPLLRMFFHDCFVRGCEGSVLLELKNKKDEKNSIPNLTLRGFEIIDNVKAALEKECPGIVSCSDVLALVARDAM------------------------------VALNGPSWEVETGRRDGLVTNITEALLNLPSPFNNISSLITQFQSKGLDKKDLVVLSG 195

HSP 2 Score: 91.6633 bits (226), Expect = 3.775e-18
Identity = 51/143 (35.66%), Postives = 71/143 (49.65%), Query Frame = 2

Query: 1067 LSGAHSMGRTHCSFIVDRLYNFNDTGKPDPSMKASLLEEMRKLCPPKTKKGQPDPLIFLNPASGSKYSFINSYYSRVLTNEAVLGVDQQLLYNEDTKQ-ITEEFAAGFEDFRRSFALSMSRMGNINVLTGKEGEIRKNCRFPN 1492
            LSG H++G  HC  I +RLYNF   G  DP++      ++R  C P       D    L    GS  +F  SY+  V     +   D  LL N++TK  + +   +    F + F +SM +MG I VLTG+ GE+RK CR  N
Sbjct:  193 LSGGHTIGNGHCPQITNRLYNFTGKGDSDPNLDTEYAVKLRGKCKP------TDTTTALEMDPGSFKTFDESYFKLVSQRRGLFQSDAALLDNQETKSYVLKSLNSDGSTFFKDFGVSMVKMGRIGVLTGQVGEVRKKCRMVN 329

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.043e-26
Identity = 68/186 (36.56%), Postives = 93/186 (50.00%), Query Frame = 2

Query:  173 TCDNAEAYIRHQVESFYKYDKTIAPKLLRLLYADCFVNGCDASVLLD--GPNSEKTAPQNRGLAGFAFIDKIKTVLEARCPGVVSCADILNLATRDAVHLVCIYLIFLIIK*ISRVFVSYKSLIHII*IQAGAPSYPVYTGRRDGMTSTKDSV--DLPSPSISWEASLTYFRSRGLDVLDMTTLLG 718
            TC N  + +R  ++   + D     K++RL + DCFVNGCD S+LLD  G  +EK AP N G  GF  +D IKT LE  CPGVVSCADIL LA+   V L                              A  PS+ V  GR+D +T+ +     D+PSP  +    +  F ++G+D+ D+  L G
Sbjct:   32 TCPNVTSIVRGVMDQRQRTDARAGAKIIRLHFHDCFVNGCDGSILLDTDGTQTEKDAPANVGAGGFDIVDDIKTALENVCPGVVSCADILALASEIGVVL------------------------------AKGPSWQVLFGRKDSLTANRSGANSDIPSPFETLAVMIPQFTNKGMDLTDLVALSG 187

HSP 2 Score: 95.1301 bits (235), Expect = 3.066e-19
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 2

Query: 1067 LSGAHSMGRTHCSFIVDRLYNFNDTGKPDPSMKASLLEEMRKLCPPKTKKGQPDPLIFLNPASGSKYSFINSYYSRVLTNEAVLGVDQQLLYNED--TKQITEEFAAGFEDFRRSFALSMSRMGNINVLTGKEGEIRKNCR 1483
            LSGAH+ GR  C     RL+NFN +G PD ++ A+ L+ ++ +CP     G      F N    +   F N Y++ + +N+ +L  DQ+L       T  I   +A     F   F  SM ++GNI+ LTG  G+IR +C+
Sbjct:  185 LSGAHTFGRARCGTFEQRLFNFNGSGNPDLTVDATFLQTLQGICPQGGNNGN----TFTNLDISTPNDFDNDYFTNLQSNQGLLQTDQELFSTSGSATIAIVNRYAGSQTQFFDDFVSSMIKLGNISPLTGTNGQIRTDCK 321

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.664e-26
Identity = 75/227 (33.04%), Postives = 112/227 (49.34%), Query Frame = 2

Query:   56 FGFALAVLSLWCSMEVAVEAAWSLQTPVNLVWHYYKVHNTCDNAEAYIRHQVESFYKYDKTIAPKLLRLLYADCFVNGCDASVLLDGPNS----EKTAPQNRGLAGFAFIDKIKTVLEARCPGVVSCADILNLATRDAVHLVCIYLIFLIIK*ISRVFVSYKSLIHII*IQAGAPSYPVYTGRRDGMTST--KDSVDLPSPSISWEASLTYFRSRGLDVLDMTTLLG 718
            FG AL ++ +   +    EA         L   +Y    TC  AE  ++  V        ++A  L+R+ + DCFV GCD S+L++  +S    EK AP N  + GF FIDK+K+ LE++CPG+VSCADI+ LATRD++                              +  G P++ V TGRRDG  S   +   ++P P  ++   +T F ++GLDV D+  L G
Sbjct:    4 FGLALLMILVIQGLVTFSEA--------QLKMGFYD--QTCPYAEKIVQDVVNQHINNAPSLAAGLIRMHFHDCFVRGCDGSILINATSSNQQVEKLAPPNLTVRGFDFIDKVKSALESKCPGIVSCADIITLATRDSI------------------------------VAIGGPTWNVPTGRRDGRISNFAEAMNNIPPPFGNFTTLITLFGNQGLDVKDLVLLSG 190

HSP 2 Score: 87.4261 bits (215), Expect = 9.835e-17
Identity = 54/148 (36.49%), Postives = 75/148 (50.68%), Query Frame = 2

Query: 1064 FLSGAHSMGRTHCSFIVDRLYNFNDTGKPDPSMKASLLEEMR-KLC---PPKTKKGQPDPLIFLNPASGSKYSFINSYYSRVLTNEAVLGVDQQLLYNEDTKQITEEFAAGFE-DFRRSFALSMSRMGNINVLTGKEGEIRKNCRFPN 1492
             LSGAH++G +HCS   +RL+NF   G  DPS+ +   + ++ + C      T K + DP        GS+ +F  SYY  VL    +   D  L  N       + FA G E +F   F+ SM +MG I V TG +GEIR+ C F N
Sbjct:  187 LLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLSIADNTTKVEMDP--------GSRNTFDLSYYRLVLKRRGLFESDAALTMNPAALAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326

The following BLAST results are available for this feature:

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot

BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
A0A0D2RM27_GOSRA	2.426e-61	93.74	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2T7R1_GOSRA	2.472e-61	93.17	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PW43_GOSAR	4.233e-61	90.85	Tbc1d15 OS=Gossypium arboreum GN=F383_16157 PE=4 S...	[more]
A0A0B0PRJ2_GOSAR	7.673e-62	90.85	Tbc1d15 OS=Gossypium arboreum GN=F383_16157 PE=4 S...	[more]
A0A0D2RM32_GOSRA	7.269e-62	94.88	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2VLZ1_GOSRA	2.469e-61	94.69	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A061EIE7_THECC	4.544e-72	82.80	Ypt/Rab-GAP domain of gyp1p superfamily protein, p...	[more]
A0A0D2RDS9_GOSRA	1.715e-93	81.48	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0D2NBN6_GOSRA	6.503e-140	81.48	Uncharacterized protein OS=Gossypium raimondii GN=...	[more]
A0A0B0PM25_GOSAR	1.176e-89	79.92	TBC1 domain family member 15 OS=Gossypium arboreum...	[more]

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BLAST of g.raimondii_cottongen_reftransV1_0001186 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 25


Match Name	E-value	Identity	Description
PER8_ARATH	1.885e-26	36.22	Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ...	[more]
PER48_ARATH	1.887e-26	36.60	Putative Peroxidase 48 OS=Arabidopsis thaliana GN=...	[more]
PER56_ARATH	3.687e-26	37.30	Peroxidase 56 OS=Arabidopsis thaliana GN=PER56 PE=...	[more]
PERX_TOBAC	4.043e-26	36.56	Lignin-forming anionic peroxidase OS=Nicotiana tab...	[more]
PER39_ARATH	4.664e-26	33.04	Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=...	[more]

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InterPro

Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	tbc_4	coord: 28..499 e-value: 3.5E-22 score: 89.7
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 308..472 e-value: 3.0E-31 score: 108.6
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 31..474 score: 28.398
IPR000195	Rab-GTPase-TBC domain	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 6..70 coord: 313..434
None	No IPR available	GENE3D	1.10.8.270		coord: 324..398 e-value: 2.4E-26 score: 91.4 coord: 23..62 e-value: 2.4E-26 score: 91.4
None	No IPR available	PANTHER	PTHR22957:SF211	RAB GTPASE ACTIVATOR PROTEIN-RELATED	coord: 1..78
None	No IPR available	PANTHER	PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	coord: 328..470 coord: 1..78
None	No IPR available	PANTHER	PTHR22957:SF211	RAB GTPASE ACTIVATOR PROTEIN-RELATED	coord: 328..470

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.raimondii_cottongen_reftransV1_0001186 ID=g.raimondii_cottongen_reftransV1_0001186; Name=g.raimondii_cottongen_reftransV1_0001186; organism=Gossypium raimondii; type=contig; length=5118bp
GTGCATATTAGGGTTTATGCTTTAAAGTGAGAAAATGAGGAGAGAAAGGT
TGGGTTTCGGTTTTGCTCTTGCAGTACTGAGCTTGTGGTGCTCAATGGAG
GTTGCGGTTGAGGCGGCATGGTCATTGCAGACTCCGGTGAACCTGGTTTG
GCATTACTATAAGGTGCATAATACATGTGATAATGCAGAGGCTTATATTA
GGCACCAAGTGGAATCGTTTTATAAGTATGATAAAACTATTGCACCTAAG
CTTCTTCGCTTGCTGTATGCGGATTGTTTTGTAAATGGATGCGATGCTTC
AGTCCTGCTAGATGGGCCGAATTCGGAGAAGACTGCACCACAGAACAGGG
GACTGGCAGGGTTCGCGTTCATCGACAAGATTAAGACGGTGCTTGAAGCT
CGTTGCCCAGGCGTTGTCTCTTGTGCTGACATTCTTAACCTCGCCACTCG
AGATGCTGTTCATTTGGTATGTATTTATTTAATTTTTCTCATCATTAAAT
AAATCTCTAGAGTATTTGTATCATATAAATCATTAATTCATATTATATAA
ATTCAGGCAGGAGCACCGTCTTATCCCGTATATACAGGGAGAAGAGACGG
GATGACATCGACCAAGGACTCCGTTGATCTCCCTTCACCATCCATCTCCT
GGGAAGCTTCTCTCACTTATTTCCGATCAAGAGGCTTGGATGTGTTGGAC
ATGACAACCCTATTAGGTAAAACACTAACACGGATACATCAACTAGTCAA
AATCTATATCTATTATTAACCTGTTAGTGTATACAAACATGTGGAATTAA
CATGAACAAGGTATGATTAAAAGCTATAGGGTGGGAGTGGAACAGAATGA
ATACTACTAATCACTTTTTTTTTCCCACTTCATTGGCAAATAGAGGAATA
AACAAACCATCAGTAATATGAACCTGGTATTTAGCTCAGTTGGTTCACAC
AACTAACCTTAAAAAGCGACTTCTAGCAGAACCGGCATTCGAACCCCAAC
ATCTGCAACTCCCTCCCCTATCCTTAGACTATGGATCCCTTTTTAATGAT
AATTTCTTGGCACTTCTTATCAGGAGCACATTCCATGGGGAGAACACACT
GCAGCTTCATTGTGGATAGGCTGTACAATTTCAATGATACAGGAAAGCCA
GATCCAAGCATGAAGGCGTCATTGTTGGAAGAAATGAGGAAGCTATGTCC
GCCAAAAACTAAAAAGGGCCAACCCGACCCGCTCATATTTCTAAACCCAG
CATCCGGATCCAAATATAGTTTCATCAACTCCTACTACTCCAGAGTGTTA
ACCAATGAAGCTGTCCTTGGAGTTGATCAGCAGCTACTCTATAACGAAGA
TACTAAGCAAATCACTGAAGAATTCGCTGCCGGGTTTGAAGATTTCAGGA
GATCATTTGCTCTTTCCATGAGTCGAATGGGAAATATCAATGTTCTAACA
GGTAAGGAAGGTGAAATACGCAAAAATTGCAGATTTCCAAACAAAAAATA
GGCGAGTCACTCGGCTCAGGGAGGAATGATTCATAAGCATAAAATTATAG
TGATGATTGTCATTGAAATGCCCAACGTCTTGGATTAAGGTATAGCATTA
ATATCATAAATATCAATAAAAAACAAAAAAATGGCAACTATTTTCTTTCC
ACAAATAAATTGTATAACTTGTTCAATCCTTCAACTAAACTGTCCTACAG
AAAAGTTAAAAGTTCAATTATCTAATAACTACACAGTATTATTTTTCTTT
CTGTAAATTCACAATTTAACATTTAGATTTTAAACTTAAATCAAATTATA
TATCGGTAAAAAGCCAGATCATGCTTGCCTAACCTGGAAGAGGTATTTTG
TGATAGATAAATGTTTACATACGTATGAACCTTGAAAAGATGGGACTTCT
TCCAACTTTCAGTCTTTTCTAGTACCTTGGAACAGACTTGAAGATAATGG
AGTGAAAAAGTAGGAAGAATCTTCGACCGCAAAGCACTTCTTCTTTATGC
TCCATTCGAGAAAGTAGGCAGGAAATGCTGTAGACCTACTGACTATGACG
ACGGGAATGCCCTTTTATCCTGATTAACTGATTACAACAAAAATTAGATT
TAATAAAGGTAACTATAAAGGAGAAACATTCAAGTGAGCAGAGAAGAGAG
TATTGTCATGCATGTCCACTGCAGTTAGCACATTTCACATGCCAACTGCC
TTAACCATAAATTACAATGCAGATAATTCATGCCATTAGTTCAACATGTT
AATGCTTTCATCCATTGCTCCAAAAGGAGAGTTGATTTGAAAGAAGAGTA
TTAATTTTGTCCAAGAACAATGTAATGCAAGGTAATGCAAAATATAGTCA
AGAAAAGCCAATGTCAAGAACACCATGTTTTGTTTTTTCCGACTATGGTC
TGTCATACAGATCACACTAAACCAATGAGTTCTATAATCAATTATAAAGA
TCACACTAGACCAGTGCTCTATTTGATATTATATTTCAGTAAACAAAGCA
AAATGCGTGCTCCTATTATTCCTGTTACTTTTACTCTTATACTCCATCTC
GACATAAGTTTTAGACATCATGTACTACCTCAAATCTGTCATTTGTGCGA
TTGGATCTCATTTTACAAGTTCTAACACCATAGCAGTATTAAAGTTTCCA
AAATGACAATGCCTTTGCACTGTCATCAGAGAGAGCAAGAGAAAGAAACA
AAAGGTTGGAGGGTTTACTGCAAAGCAGAGGAATGGGTTGAATTTACATT
TCACCTCTCGCTCATATTTCCATAAGAGGAAAATAATACAATTACTAACC
TTGCAAAAGTATTTTTTTCTTAGTCTGATTGCTGTACCTACGCACCTTCT
GACATGGACTTTTAGAAGCTTATCATTGAAAATCTTTATCATGTCATCTA
TTGAACGGGTTTCCTTGATGAGTTTCTGGCGGTTCATGATAAGAATAGCA
GCCACACAAAAGACAGGCAAATCATCATCCCCTTTCCTAGTTGGAGAGAC
AACATTGCATATTTGGAGACGATCATTTCTAGACCAAAAATTCCGGGTCA
AACCACAAAAGTGATAAGTCGATGCAGCTTTTATTCCTTCGTTCTCAGAC
AAAGAATGCTTAAATTGTAGGCCACCTATTGCATTATGATTTCCATTTTC
TGTATTTTCTTCTTCATCTTCTGCCCTAGAGTCCCCAGGAACTTGTACAG
TCAATGCCTCTAAACAGATCTTCTCTAGATTGCAATTGACAGATTCATCA
AAATCAGCTGCCCACATCATCTAAATTGGGGTCCATATTTTTAGTTCCAA
TATCAAAAGAAAGAAATGAAGTATAAAATAAAATGGAAAGAATATAAAAA
GTAAAAAATAGTTCCTGGTTTCTATGAGTTCTTGAGATTTTTACTGTTGA
TCTTGACTTCACTAACAGGCTAATATTCCATTTAAAAAAACCATTCTCAT
AAACAGCAAGTCAGAGTATGAATTGAAAAAGCTGAACTCAAAAATTAGTA
CCAGAAACTTTAGGCTCAATCTGGTGAGCATTATAATATAATAGTACCAT
AAATTGAGACAGTTGAGAGCAGTAAATGAAACTAAATGCACAGACCTCCC
ACATACAAAGAGCATCATTGAAGGATAACTCTCGGCGAAATAGAACCAGC
AGCATTGGAAATGCAAAATGAAGGCTTTCAGCACCTATCTTTGATAGATG
TATAAATATTTCCCTATCTGTGAGTTCCAAAATATGCCACAATGCTTGCA
GCTGCTTCATCACTCCAGTTGGTCCCTCCATCTGAAAATTTTCACGCATT
CTCCTAATCAACATTTCAAAGCACCAAAATGCATCTGCATTATCCTCAAA
GATAACAACAAAAGGAGATAGCAGATCACTCATACCTTGACAATAACCAG
TTGCACGATCAACCCATGCATAAACAGCAAGAATATCAGACATTCTAGCA
ACATTTCTTTTATCCTCATAGAACTCAAGATTACTATCCGTTCTCACCAC
ATCAACAACTATTCGGTGCAGAGTCCAAAGCCATTCACTTACTCTTTCTT
CTTGGGCAGCCCTTTCTTGTGATCTGGTTGCATTTACAAATGGTGTTTCT
GGGACACTTGATATGCTTAATCTGTTCACTGTTTCCGTTTTATAACTTAC
ACTGTTGGGTCTGAGGACTGGCTCATAGTCATCAGAATAGGTCACCAACT
CAATTTCAGAGTTATATCGACATGAGACATTTTTAGATAGTGAGGATGAA
ACATTTGATTCCATAATTAAATCAGCATTGTTATTGATTTGAAAACTATG
CATATTATCATCCTCAAACATCAATTTATATTGAGCAGAATACACTTCCT
CATTTGCATCAAATTCTTTCTTATCTTCACTCTTCTCAAACAAATCTGTT
ACTGGTAAGGGGGGGAAATCAAAATCACATTCAGTTATGAAATCTGACCC
ATTACAGTCTCCCCCTCTTTTTGAGGAACAAGGACCACATGGAACAGAAG
TCGATGAAGAACAAGAATCGTATGCAGCACTGTCAGCATTTCTCCTGACA
CTTGTAAGGTCACCAGAATTACTAACATTCACTCTTTGGTCAACATACAA
GCTATCAGAACAGTTATTGCCGAGATCAGAATATTTCTCTCTTTTATCAG
TATCATCAGTGGAAGCTTCTCTACACTCTACTTTTGCTTCTTTGGAGGGT
GTCCTCATATCCATAACTTTTGAACCTACAGGATAGGCAAGTGAACCAGT
TCCTATGCTTGAATGCATTGTCTGGCATTGCTTTATAAGGTCCTTGTAAC
GTTCCCTCCGGGCTATCCTTAATTGCCTTCGGTGATCTGCAGTGCTCCCC
AATGCATAGCAACCTAGAAGAAACTCCCAAACTTCTGATCTTATAGATGG
ATCGACCCCCCCTAAAATAATCAACTTGAGTACTTTGTGAAAATCAACAA
CCTTCCCTTCATTATCAAAAGCAGCCTGCCACTTCTCTGGCTTCAGCATC
TTGTTTGCCTTGATAGGAGACTGGGAAAGACAAGGATCTCCGATGTCGCG
AACGATTGAACCGACTCTGTGAATATTGACAGCTCCGGCAGCAGCGGCGA
CGGCAGCTTTTCCATACC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **INTERPRO**
Term	Definition
IPR000195	Rab-GAP-TBC_dom

Search form

g.raimondii_cottongen_reftransV1_0001186, g.raimondii_cottongen_reftransV1_0001186 (contig) Gossypium raimondii

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