g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A068U9T8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00019842001 PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 2.488e-9 Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -2 Query: 304 MAPTMAAPE----------------EELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLS------KGNNLLINNHPSP 594 MAPT+ P E L+KRN+ELEKEL+++ ERE+++R+EL++ W+RLRVAEEAEERLCSQLGELEAE+V QAR+Y + ++ LMDQLS +G ++ + P+P Sbjct: 1 MAPTLVVPAFARTKQPEHVVEREDGEILKKRNEELEKELQKAMEREKRLREELQRTWQRLRVAEEAEERLCSQLGELEAEAVGQARSYRASMMALMDQLSAAQKLLQGASIAVPVAPTP 119
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V7BA44_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G187900g PE=4 SV=1) HSP 1 Score: 61.2326 bits (147), Expect = 8.188e-9 Identity = 52/91 (57.14%), Postives = 74/91 (81.32%), Query Frame = -2 Query: 298 EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAP 570 E EL+KRN+ELE+ELK SRERE+ +R++LR +RL VAE+AEERLC QLG+LEAE++ QAR Y++ +++L+DQLS+ ++LL P P+P Sbjct: 4 ERELQKRNEELEEELKRSREREDHVRRQLRAALDRLTVAEDAEERLCVQLGDLEAEALQQAREYHARVVSLVDQLSQAHSLLNTTFPLPSP 94
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1MB59_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 9.885e-9 Identity = 57/109 (52.29%), Postives = 86/109 (78.90%), Query Frame = -2 Query: 295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621 KK+KT + T ++ E +L+KRN+ELE+EL +S+EREE +R++LR +RL VAEEAEERLC+QLG+LEAE++ QAR Y++ I++L+DQLS+ ++LL+N +P P+ Sbjct: 8 KKKKTNTRE-CETTSSLELQLKKRNEELEEELSQSKEREEHVRRQLRAALDRLTVAEEAEERLCAQLGDLEAEALQQAREYHARIVSLVDQLSQAHSLLLN---TPIPL 112
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000547 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 9.969e-9 Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = -2 Query: 325 AAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 579 A PE E LR+RN+ELEKELK+S EREE+M++EL K WERLRVAEEAEERLCSQLGE EAE+V+QAR + I TLMDQLS LL Sbjct: 16 AVPESEVLRRRNEELEKELKKSIEREEKMKEELNKTWERLRVAEEAEERLCSQLGEFEAEAVDQARINRTRIHTLMDQLSMAQKLL 101
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0B2S418_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009392 PE=4 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 1.002e-8 Identity = 57/109 (52.29%), Postives = 86/109 (78.90%), Query Frame = -2 Query: 295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621 KK+KT + T ++ E +L+KRN+ELE+EL +S+EREE +R++LR +RL VAEEAEERLC+QLG+LEAE++ QAR Y++ I++L+DQLS+ ++LL+N +P P+ Sbjct: 8 KKKKTNTRE-CETTSSLELQLKKRNEELEEELSQSKEREEHVRRQLRAALDRLTVAEEAEERLCAQLGDLEAEALQQAREYHARIVSLVDQLSQAHSLLLN---TPIPL 112 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bpback to top |