g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001179
Unique Nameg.raimondii_cottongen_reftransV1_0001179
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length838
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeg.raimondii_cottongen_reftransV1_0001179:1..838 .
Chr04:33174201..33212742 +
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A068U9T8_COFCA (Coffea canephora DH200=94 genomic scaffold, scaffold_15 OS=Coffea canephora GN=GSCOC_T00019842001 PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.488e-9
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = -2
Query:  304 MAPTMAAPE----------------EELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLS------KGNNLLINNHPSP 594
            MAPT+  P                 E L+KRN+ELEKEL+++ ERE+++R+EL++ W+RLRVAEEAEERLCSQLGELEAE+V QAR+Y + ++ LMDQLS      +G ++ +   P+P
Sbjct:    1 MAPTLVVPAFARTKQPEHVVEREDGEILKKRNEELEKELQKAMEREKRLREELQRTWQRLRVAEEAEERLCSQLGELEAEAVGQARSYRASMMALMDQLSAAQKLLQGASIAVPVAPTP 119          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V7BA44_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G187900g PE=4 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 8.188e-9
Identity = 52/91 (57.14%), Postives = 74/91 (81.32%), Query Frame = -2
Query:  298 EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAP 570
            E EL+KRN+ELE+ELK SRERE+ +R++LR   +RL VAE+AEERLC QLG+LEAE++ QAR Y++ +++L+DQLS+ ++LL    P P+P
Sbjct:    4 ERELQKRNEELEEELKRSREREDHVRRQLRAALDRLTVAEDAEERLCVQLGDLEAEALQQAREYHARVVSLVDQLSQAHSLLNTTFPLPSP 94          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: I1MB59_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.885e-9
Identity = 57/109 (52.29%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621
            KK+KT +     T ++ E +L+KRN+ELE+EL +S+EREE +R++LR   +RL VAEEAEERLC+QLG+LEAE++ QAR Y++ I++L+DQLS+ ++LL+N   +P P+
Sbjct:    8 KKKKTNTRE-CETTSSLELQLKKRNEELEEELSQSKEREEHVRRQLRAALDRLTVAEEAEERLCAQLGDLEAEALQQAREYHARIVSLVDQLSQAHSLLLN---TPIPL 112          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: M0ZIJ2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000547 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.969e-9
Identity = 61/86 (70.93%), Postives = 70/86 (81.40%), Query Frame = -2
Query:  325 AAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 579
            A PE E LR+RN+ELEKELK+S EREE+M++EL K WERLRVAEEAEERLCSQLGE EAE+V+QAR   + I TLMDQLS    LL
Sbjct:   16 AVPESEVLRRRNEELEKELKKSIEREEKMKEELNKTWERLRVAEEAEERLCSQLGEFEAEAVDQARINRTRIHTLMDQLSMAQKLL 101          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A0B2S418_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009392 PE=4 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.002e-8
Identity = 57/109 (52.29%), Postives = 86/109 (78.90%), Query Frame = -2
Query:  295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621
            KK+KT +     T ++ E +L+KRN+ELE+EL +S+EREE +R++LR   +RL VAEEAEERLC+QLG+LEAE++ QAR Y++ I++L+DQLS+ ++LL+N   +P P+
Sbjct:    8 KKKKTNTRE-CETTSSLELQLKKRNEELEEELSQSKEREEHVRRQLRAALDRLTVAEEAEERLCAQLGDLEAEALQQAREYHARIVSLVDQLSQAHSLLLN---TPIPL 112          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A068U9T8_COFCA2.488e-949.58Coffea canephora DH200=94 genomic scaffold, scaffo... [more]
V7BA44_PHAVU8.188e-957.14Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
I1MB59_SOYBN9.885e-952.29Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
M0ZIJ2_SOLTU9.969e-970.93Uncharacterized protein OS=Solanum tuberosum GN=PG... [more]
A0A0B2S418_GLYSO1.002e-852.29Uncharacterized protein OS=Glycine soja GN=glysoja... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableCOILSCoilCoilcoord: 9..40
NoneNo IPR availablePANTHERPTHR34283FAMILY NOT NAMEDcoord: 3..96
NoneNo IPR availablePANTHERPTHR34283:SF1SUBFAMILY NOT NAMEDcoord: 3..96

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bp
CAGCTTTCCTTTTCATTTTACCAAACTATTTTTAATATATTTGAAGAAGA
AAAAAACACAAATTTTTTTATATATCAGAATTAAATCAACTTAATTGAGT
TTCACAATATGAAACAGCCAGTGAAACATATCAGCACTACCTTTACCAAT
TAACATCAACAAACACCACCAAGTGTTAACAACTATTACATATATAGATC
CATACCATACCCATAATTAACGAATTTAGAATCCCCATGCCTTTGGTTAG
ATAGATAAAAAGAACATCAGCCAAAAGCAGAATCAGAGGATGGAGATGGG
TGCAGGGGATGGGTGGTTGTTGATGAGAAGGTTGTTACCCTTGGAGAGCT
GGTCCATGAGGGTAAGTATGTGGGAGTTGTAAGCACGGGCCTGATTGACG
GACTCTGCTTCCAGCTCGCCCAGCTGAGAACAGAGCCTTTCCTCCGCCTC
TTCCGCCACCCTCAGCCTTTCCCACATCTTTCGTAATTCCTTTCTCATCT
GCTCCTCTCTTTCCCTACTCTCCTTCAATTCCTTCTCTAACTCCTGGTTC
CTCTTCCTCAACTCTTCTTCTGGTGCCGCCATTGTTGGAGCCATGTGATA
GCTTGCTGTTTTTTGTTTTTTCTTCTAGTGGAGTTGTGAATCAACCAATG
TGGAGGAATCGATTCTCTTAAAGGCCTAGGACCCTCCGACGCAAAGTGTC
CAGGTTCAATGTATCTAGTTTGCTTCGCCTTGTTTCGTCGTCGTCTTCTT
TTTTTCTAATTATTATATTTGCTTACGTGCTTGCTTTGCAAATTCAATTT
TTGAACCTTCAATTTTCAATTCTTAAGTCTTATCCCCA
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