g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ96_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096780.1 PE=4 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.529e-12 Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = -2 Query: 325 ASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 606 A+ H A PE E LR+RN+ELEKELK+S EREE+M++EL+K W+RLRVAEEAEERLCSQLGELEAE+V+QARAY + ++ LMDQLS LL Sbjct: 12 ANPHRREVSAVPESEVLRRRNEELEKELKKSIEREEKMKEELQKTWDRLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKLL 106
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: W9SQB7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000117 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 6.078e-12 Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = -2 Query: 295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621 K+QK A A E L+KRN+ELE+EL+ES+EREEQM+ EL + W+RLRVAEEAEERLCSQLGELEAE+V+QAR+Y++ I++LMDQL++ LL H + PI Sbjct: 5 KQQKVA------VAVAGGEALKKRNEELERELRESQEREEQMKSELFRTWDRLRVAEEAEERLCSQLGELEAEAVDQARSYHARIVSLMDQLARAQQLL---HQASVPI 104
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067JXP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25170 PE=4 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 6.780e-12 Identity = 56/81 (69.14%), Postives = 72/81 (88.89%), Query Frame = -2 Query: 319 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLIN 561 L+KRN+ELE LKES++REE MR+EL+K W RL+VAEEA ERLC+QLGELEAESVN+ARAYN+ IL+L+DQLS+ ++L+ N Sbjct: 14 LKKRNEELETALKESKQREELMREELQKTWRRLQVAEEAGERLCTQLGELEAESVNEARAYNARILSLLDQLSQAHHLIHN 94
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ95_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096770.1 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.285e-12 Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = -2 Query: 325 KTASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 612 +T +H T A PE E LR+RN+ELEKELK+S EREE+MR+EL+K W+RLRVAEE CSQLGE EAE+V+QARAY + ++ LMDQLS LL Sbjct: 11 QTTPHHRRETSAVPESEVLRRRNEELEKELKKSFEREEKMREELQKTWKRLRVAEERL---CSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLL 104
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.440e-11 Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = -2 Query: 325 TMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 585 + PE EL++RN +LEKELKES+EREEQMR++L+ WERLRVAEEAEERLCSQLGELEAE+V QAR Y+ I++LMDQLS+ +LL Sbjct: 23 AVPVPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARDYHDRIVSLMDQLSRAQSLL 109
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: B9RBI1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677050 PE=4 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.977e-11 Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = -2 Query: 301 EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPA 570 EE+L+ RN+ELEK LKES+ERE +MR+EL++ W RLR+AEEAEERLCSQLGELEAE+VNQARAYN+ IL LMDQLS H SPA Sbjct: 12 EEQLKMRNEELEKALKESKEREGEMREELQRAWHRLRIAEEAEERLCSQLGELEAEAVNQARAYNARILFLMDQLS---------HLSPA 92
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V7AUV5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G040500g PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.353e-11 Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = -2 Query: 295 AAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 579 A E EL+KRN+ELEKEL+ES++REEQM++EL WERLRVAEEAEERLCSQLGELEAE+V AR Y++ I++LM+QLS+ +LL+ S P+ Sbjct: 23 APAENELKKRNEELEKELRESKDREEQMKRELHSAWERLRVAEEAEERLCSQLGELEAEAVYHARDYHAQIVSLMEQLSRAQSLLLKTGASSIPL 117
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: Q0ZIH9_TOBAC (UP-9A OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.941e-10 Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = -2 Query: 325 HMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 597 H A PE E LR+RN+ELEKELK+S EREE+M++EL+K WERLRVAEEAEERLCSQLGELEAE+V+QAR Y + ++ LMDQLS LL Sbjct: 15 HRRDISAMPESEILRRRNEELEKELKKSIEREEKMKQELQKTWERLRVAEEAEERLCSQLGELEAEAVDQARTYRTRVIHLMDQLSLAQKLL 106
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ94_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096760.1 PE=4 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 2.381e-10 Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = -2 Query: 313 AAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNH 579 A PE E LR+RN+ELEKELK+S EREE+M++EL K WE+LRVAEEAEERLCSQLGE EAE+V+QAR Y + I TLMDQLS L+ ++ Sbjct: 16 AVPESEVLRRRNEELEKELKKSIEREEKMKEELNKTWEKLRVAEEAEERLCSQLGEFEAEAVDQARIYRTRIHTLMDQLSTAQKLVQSDQ 105
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: B9IDD3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00280g PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 8.366e-10 Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = -2 Query: 325 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 561 L+KRN+ELEK L+ES+ RE +M EL++ WERLRVAEEAEE LCSQLGELEAE+ NQARAY+S IL+LM++LS+ +NLL Sbjct: 14 LKKRNEELEKALEESKRREAKMISELQRTWERLRVAEEAEESLCSQLGELEAEAANQARAYHSRILSLMNELSQAHNLL 92 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bpback to top |