g.raimondii_cottongen_reftransV1_0001179, g.raimondii_cottongen_reftransV1_0001179 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001179
Unique Nameg.raimondii_cottongen_reftransV1_0001179
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length838
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeg.raimondii_cottongen_reftransV1_0001179:1..838 .
Chr04:33174201..33212742 +
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ96_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096780.1 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.529e-12
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = -2
Query:  325 ASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 606
            A+ H     A PE E LR+RN+ELEKELK+S EREE+M++EL+K W+RLRVAEEAEERLCSQLGELEAE+V+QARAY + ++ LMDQLS    LL
Sbjct:   12 ANPHRREVSAVPESEVLRRRNEELEKELKKSIEREEKMKEELQKTWDRLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKLL 106          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: W9SQB7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000117 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.078e-12
Identity = 64/109 (58.72%), Postives = 83/109 (76.15%), Query Frame = -2
Query:  295 KKQKTASYHMAPTMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 621
            K+QK A         A  E L+KRN+ELE+EL+ES+EREEQM+ EL + W+RLRVAEEAEERLCSQLGELEAE+V+QAR+Y++ I++LMDQL++   LL   H +  PI
Sbjct:    5 KQQKVA------VAVAGGEALKKRNEELERELRESQEREEQMKSELFRTWDRLRVAEEAEERLCSQLGELEAEAVDQARSYHARIVSLMDQLARAQQLL---HQASVPI 104          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: A0A067JXP7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25170 PE=4 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.780e-12
Identity = 56/81 (69.14%), Postives = 72/81 (88.89%), Query Frame = -2
Query:  319 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLIN 561
            L+KRN+ELE  LKES++REE MR+EL+K W RL+VAEEA ERLC+QLGELEAESVN+ARAYN+ IL+L+DQLS+ ++L+ N
Sbjct:   14 LKKRNEELETALKESKQREELMREELQKTWRRLQVAEEAGERLCTQLGELEAESVNEARAYNARILSLLDQLSQAHHLIHN 94          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ95_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096770.1 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.285e-12
Identity = 59/97 (60.82%), Postives = 73/97 (75.26%), Query Frame = -2
Query:  325 KTASYHMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 612
            +T  +H   T A PE E LR+RN+ELEKELK+S EREE+MR+EL+K W+RLRVAEE     CSQLGE EAE+V+QARAY + ++ LMDQLS    LL
Sbjct:   11 QTTPHHRRETSAVPESEVLRRRNEELEKELKKSFEREEKMREELQKTWKRLRVAEERL---CSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLL 104          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: G7J9Q1_MEDTR (Response to low sulfur protein, putative OS=Medicago truncatula GN=MTR_3g093400 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.440e-11
Identity = 60/87 (68.97%), Postives = 74/87 (85.06%), Query Frame = -2
Query:  325 TMAAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 585
             +  PE EL++RN +LEKELKES+EREEQMR++L+  WERLRVAEEAEERLCSQLGELEAE+V QAR Y+  I++LMDQLS+  +LL
Sbjct:   23 AVPVPESELKRRNDQLEKELKESKEREEQMRRQLQSAWERLRVAEEAEERLCSQLGELEAEAVYQARDYHDRIVSLMDQLSRAQSLL 109          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: B9RBI1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1677050 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.977e-11
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  301 EEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPA 570
            EE+L+ RN+ELEK LKES+ERE +MR+EL++ W RLR+AEEAEERLCSQLGELEAE+VNQARAYN+ IL LMDQLS         H SPA
Sbjct:   12 EEQLKMRNEELEKALKESKEREGEMREELQRAWHRLRIAEEAEERLCSQLGELEAEAVNQARAYNARILFLMDQLS---------HLSPA 92          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: V7AUV5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G040500g PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.353e-11
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = -2
Query:  295 AAPEEELRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNHPSPAPI 579
            A  E EL+KRN+ELEKEL+ES++REEQM++EL   WERLRVAEEAEERLCSQLGELEAE+V  AR Y++ I++LM+QLS+  +LL+    S  P+
Sbjct:   23 APAENELKKRNEELEKELRESKDREEQMKRELHSAWERLRVAEEAEERLCSQLGELEAEAVYHARDYHAQIVSLMEQLSRAQSLLLKTGASSIPL 117          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: Q0ZIH9_TOBAC (UP-9A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.941e-10
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = -2
Query:  325 HMAPTMAAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 597
            H     A PE E LR+RN+ELEKELK+S EREE+M++EL+K WERLRVAEEAEERLCSQLGELEAE+V+QAR Y + ++ LMDQLS    LL
Sbjct:   15 HRRDISAMPESEILRRRNEELEKELKKSIEREEKMKQELQKTWERLRVAEEAEERLCSQLGELEAEAVDQARTYRTRVIHLMDQLSLAQKLL 106          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: K4BJ94_SOLLC (Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g096760.1 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.381e-10
Identity = 60/90 (66.67%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  313 AAPEEE-LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLLINNH 579
            A PE E LR+RN+ELEKELK+S EREE+M++EL K WE+LRVAEEAEERLCSQLGE EAE+V+QAR Y + I TLMDQLS    L+ ++ 
Sbjct:   16 AVPESEVLRRRNEELEKELKKSIEREEKMKEELNKTWEKLRVAEEAEERLCSQLGEFEAEAVDQARIYRTRIHTLMDQLSTAQKLVQSDQ 105          
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Match: B9IDD3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00280g PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 8.366e-10
Identity = 55/79 (69.62%), Postives = 69/79 (87.34%), Query Frame = -2
Query:  325 LRKRNQXXXXXXXXXXXXXEQMRKELRKMWXXXXXXXXXXXXLCSQLGELEAESVNQARAYNSHILTLMDQLSKGNNLL 561
            L+KRN+ELEK L+ES+ RE +M  EL++ WERLRVAEEAEE LCSQLGELEAE+ NQARAY+S IL+LM++LS+ +NLL
Sbjct:   14 LKKRNEELEKALEESKRREAKMISELQRTWERLRVAEEAEESLCSQLGELEAEAANQARAYHSRILSLMNELSQAHNLL 92          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
K4BJ96_SOLLC4.529e-1266.32Uncharacterized protein OS=Solanum lycopersicum GN... [more]
W9SQB7_9ROSA6.078e-1258.72Uncharacterized protein OS=Morus notabilis GN=L484... [more]
A0A067JXP7_JATCU6.780e-1269.14Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
K4BJ95_SOLLC8.285e-1260.82Uncharacterized protein OS=Solanum lycopersicum GN... [more]
G7J9Q1_MEDTR1.440e-1168.97Response to low sulfur protein, putative OS=Medica... [more]
B9RBI1_RICCO2.977e-1168.89Putative uncharacterized protein OS=Ricinus commun... [more]
V7AUV5_PHAVU3.353e-1163.16Uncharacterized protein OS=Phaseolus vulgaris GN=P... [more]
Q0ZIH9_TOBAC1.941e-1067.39UP-9A OS=Nicotiana tabacum PE=2 SV=1[more]
K4BJ94_SOLLC2.381e-1066.67Uncharacterized protein OS=Solanum lycopersicum GN... [more]
B9IDD3_POPTR8.366e-1069.62Uncharacterized protein OS=Populus trichocarpa GN=... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001179 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 44..64
NoneNo IPR availableCOILSCoilCoilcoord: 9..40
NoneNo IPR availablePANTHERPTHR34283FAMILY NOT NAMEDcoord: 3..96
NoneNo IPR availablePANTHERPTHR34283:SF1SUBFAMILY NOT NAMEDcoord: 3..96

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001179 ID=g.raimondii_cottongen_reftransV1_0001179; Name=g.raimondii_cottongen_reftransV1_0001179; organism=Gossypium raimondii; type=contig; length=838bp
CAGCTTTCCTTTTCATTTTACCAAACTATTTTTAATATATTTGAAGAAGA
AAAAAACACAAATTTTTTTATATATCAGAATTAAATCAACTTAATTGAGT
TTCACAATATGAAACAGCCAGTGAAACATATCAGCACTACCTTTACCAAT
TAACATCAACAAACACCACCAAGTGTTAACAACTATTACATATATAGATC
CATACCATACCCATAATTAACGAATTTAGAATCCCCATGCCTTTGGTTAG
ATAGATAAAAAGAACATCAGCCAAAAGCAGAATCAGAGGATGGAGATGGG
TGCAGGGGATGGGTGGTTGTTGATGAGAAGGTTGTTACCCTTGGAGAGCT
GGTCCATGAGGGTAAGTATGTGGGAGTTGTAAGCACGGGCCTGATTGACG
GACTCTGCTTCCAGCTCGCCCAGCTGAGAACAGAGCCTTTCCTCCGCCTC
TTCCGCCACCCTCAGCCTTTCCCACATCTTTCGTAATTCCTTTCTCATCT
GCTCCTCTCTTTCCCTACTCTCCTTCAATTCCTTCTCTAACTCCTGGTTC
CTCTTCCTCAACTCTTCTTCTGGTGCCGCCATTGTTGGAGCCATGTGATA
GCTTGCTGTTTTTTGTTTTTTCTTCTAGTGGAGTTGTGAATCAACCAATG
TGGAGGAATCGATTCTCTTAAAGGCCTAGGACCCTCCGACGCAAAGTGTC
CAGGTTCAATGTATCTAGTTTGCTTCGCCTTGTTTCGTCGTCGTCTTCTT
TTTTTCTAATTATTATATTTGCTTACGTGCTTGCTTTGCAAATTCAATTT
TTGAACCTTCAATTTTCAATTCTTAAGTCTTATCCCCA
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