g.raimondii_cottongen_reftransV1_0001141, g.raimondii_cottongen_reftransV1_0001141 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001141
Unique Nameg.raimondii_cottongen_reftransV1_0001141
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length994
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr09chromosomeg.raimondii_cottongen_reftransV1_0001141:1..994 .
Chr09:2996095..2997087 +
Homology
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BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Match: V4UUF7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010178mg PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.552e-7
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 3 
Query:  123 MEPRGACRSNRSS-FEKWVAIVLTFLAVVSPLYVN-QKPTELELEEQSMDFTSXXXXXXXXXXXXXXXXXXXNQSFTRFDRHWI 368
            MEP    R  RSS + + VAI+LT LAV SPLY++ ++ ++LELEEQ ++FT  L LL ++L+LA    L  +QSF+RFD +WI
Sbjct:    1 MEPITTYRIRRSSSYGRLVAIILTVLAVFSPLYIDRRRESDLELEEQPINFTFLLPLLLLVLILAITLSLCFDQSFSRFDPYWI 84
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 11
Match NameE-valueIdentityDescription
V4UUF7_9ROSI4.552e-750.00Uncharacterized protein OS=Citrus clementina GN=CI... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001141 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758FAMILY NOT NAMEDcoord: 82..186
NoneNo IPR availablePANTHERPTHR35758:SF2SUBFAMILY NOT NAMEDcoord: 82..186
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..183
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 75..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 184..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 129..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 150..160
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..74
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 114..128
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 21..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..113
NoneNo IPR availableTMHMMTMhelixcoord: 128..150
NoneNo IPR availableTMHMMTMhelixcoord: 53..75
NoneNo IPR availableTMHMMTMhelixcoord: 21..38
NoneNo IPR availableTMHMMTMhelixcoord: 161..183
NoneNo IPR availableTMHMMTMhelixcoord: 96..113

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001141 ID=g.raimondii_cottongen_reftransV1_0001141; Name=g.raimondii_cottongen_reftransV1_0001141; organism=Gossypium raimondii; type=contig; length=994bp
GGGAAAGTTCACACCTTTCTTTAAAAAAGAAAAAAAGAGGCAAATATAGG
ATTATATTACGAACTGGGAAATTCTCAATAAGAAAAAAAAAGGGTTGCTC
CTAAAGAAATTTGTTTTCATCAATGGAGCCTAGAGGTGCTTGCAGATCAA
ACAGGTCTTCATTTGAGAAATGGGTGGCAATTGTATTGACCTTTCTAGCT
GTGGTTTCACCTCTCTACGTCAACCAAAAGCCAACAGAGCTGGAGCTTGA
AGAGCAATCCATGGACTTCACCTCATGGTTATGTCTCCTGTTTGTGCTAC
TGCTCTTGGCCTTTGCTTTCTGGCTTTACTTGAACCAGAGCTTTACCAGG
TTCGACCGTCATTGGATTAGGCCGAGCAGGTATTCATCATATGAAAGACT
GGTTGCAATAGGCTTGATAGTCTTAGGTGTTCTTTCTCCTCTTTATATCA
ACAAGGGCACGAGTGAGCTCGAACCTGATGAGCAGCCCATCAACTTTGCT
TCTTGGTTGCCTCTTCTGCTATTGATATTAACCTTGGCCATCGCTACATT
GCTTTTCTGTGATAGAGGCTGTACGAAGTTCGATCCTAACTGGATTCATA
GAGTTGGGGGTTCTTCTGCTGGGATCTTACTGGTTCTTTTGATTCTTGCT
GTCGTTTTGAAGTGTAAGAATGCCGGTTGAAGTTGAATTTCTAACAACAG
GAAGTGATTCATTAAAGAACACAAGTCATGAAGCTTCTGTTTCTGTCAAT
GTCTTGGAGACGAAGGTTCTCTGTTTCATAGTTGCAGCCTTGCAGGTATT
AGACCATGTCATTGTAAGAAGAACGAATGTACAGTTTACTGTTAAACTGG
TGTTTTATCCAGTTGTGTACGGTTTCCATAATCCCTGTAACAGGGCTTTA
CCACAAAGCCAAGCTCTATACTTGACTATATTGGACGCATGGTGTGAATG
TAGTTCAAGTGTTCAACAATGTCACCTGCTCACGTATGCATAAA
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