g.raimondii_cottongen_reftransV1_0001112, g.raimondii_cottongen_reftransV1_0001112 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: V4L0C2_EUTSA (MATE efflux family protein OS=Eutrema salsugineum GN=EUTSA_v10002904mg PE=3 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 2.315e-88 Identity = 140/237 (59.07%), Postives = 181/237 (76.37%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS++ GL GALETL GQAYGA +Y K+G+YTY AI ++PIC + ++W+YM+KLL+ IGQDP+++++A YA+ LIP LF A+ Q RF Q+Q LV+P+++ +L TL F+I VCW LVF FG GS G ALAIS S WFNV++L Y+R+S SCEKTR+ D VK+FFH+ IPSA M CLEWW FE+L+L SGLLPN KLETSVLS+CL+ SLHY I Sbjct: 70 VALATSFANVSGFSIMAGLVGALETLCGQAYGAKRYAKMGTYTYSAIASNVPICFLISIVWIYMEKLLISIGQDPEISKLAGSYAVWLIPALFAQAVQQPLTRFLQTQGLVIPLLYCALTTLLFYIPVCWTLVFTFGLGSNGAALAISLSYWFNVLILAVYVRFSSSCEKTRSFVSHDFVSGVKQFFHYGIPSAAMTCLEWWLFELLILSSGLLPNPKLETSVLSVCLTIGSLHYVI 306
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: U5GCB2_POPTR (MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0005s15040g PE=3 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 5.605e-88 Identity = 146/235 (62.13%), Postives = 190/235 (80.85%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHY 706 V+I +F VTGFSLL+GL G LETL GQAYGA QY KLG+YTYCAII +PIC+PV +LW++MD++L+ IGQDP+++ +A +YA+CLIP LF AI+QS +R+FQS +L+LPM+ S+ TL FHI +CW L+FK+ G KG ALAI S W NVI LG YM +S SC+KTR ++ D+F S+KEFF FA+PSAVM CLEWW+FE+L+L++GLLPNS+LETSVLSICL++ SLH+ Sbjct: 66 VSIGGSFATVTGFSLLFGLTGGLETLCGQAYGAEQYQKLGTYTYCAIISLIPICIPVSILWIFMDRILIEIGQDPEISTVACQYAICLIPALFADAILQSLLRYFQSMNLILPMLLSTSVTLFFHIPLCWALIFKWKLGVKGAALAIDVSYWLNVIFLGLYMGFSSSCKKTRVINWNDIFSSIKEFFCFALPSAVMVCLEWWTFELLILLAGLLPNSQLETSVLSICLTTISLHF 300
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: M5XS17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015054mg PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 8.475e-88 Identity = 142/223 (63.68%), Postives = 182/223 (81.61%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETS 667 V+IAT+F +VTGFSLL GL GALETL GQAYGA QY KLG YTY +I+C +C+P+ LLW++ DK+L LIGQDP ++ +A++Y++CLIP LF YA++QS VR+FQ+QSL+LPM++SS A LC H+ +CW L FK GS G ALAISFS WFNV+LLGFYM+YS +CEKTR L +VFL++KEFF FA+PSA+M CLEWWS+E+L+L+SG+L N KLETS Sbjct: 14 VSIATSFTSVTGFSLLSGLVGALETLCGQAYGAEQYQKLGIYTYTSILCLCLVCVPISLLWIFTDKILQLIGQDPLISNVAHKYSLCLIPNLFSYAVLQSLVRYFQTQSLILPMLYSSCAALCLHVPLCWGLTFKLKLGSIGAALAISFSCWFNVLLLGFYMKYSVACEKTRAHVLSIEVFLNIKEFFRFAVPSALMVCLEWWSYEVLILLSGILSNPKLETS 236
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: D7L7F2_ARALL (MATE efflux family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_342752 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.009e-87 Identity = 140/234 (59.83%), Postives = 177/234 (75.64%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLH 703 VA+ATAF NV+GF +++GL GALETL GQAYGA QY K+G+YTY AI+ ++PICL + +LW YMDKLL+ IGQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC LV+ FG GS G ALAI FS WFNV++L Y+R+S SCEKTR D LSVK+FF + IPSA M +EW FE+L+L SGLLPN KLETSVLSICL++ SLH Sbjct: 70 VALATAFANVSGFGIMYGLVGALETLCGQAYGAKQYDKIGTYTYSAIVSNVPICLLISILWFYMDKLLISIGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLTLVYAFGLGSNGAALAIGFSYWFNVLILALYVRFSRSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLH 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: D7L7F3_ARALL (MATE efflux family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_480065 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.135e-87 Identity = 140/237 (59.07%), Postives = 179/237 (75.53%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFSL++GL GALETL GQAYGA QY K+G+YTY AI+ ++PI + + +LW YMDKLL+ IGQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC VLV+ FG GS G ALAI S WFNV++L Y+R+S +CEKTR D LSVK+FF + IPSA M +EW FE+L+L SGLLPN KLETSVLSICL++ SLHY I Sbjct: 70 VALATSFANVSGFSLMFGLVGALETLCGQAYGAKQYAKIGTYTYSAIVSNIPIVVLISILWFYMDKLLISIGQDPDISKVAGSYAVCLIPALLAQAVQQPLNRFLQTQGLVLPLLYCAITTLLFHIFVCLVLVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLHYVI 306
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.334e-19 Identity = 66/221 (29.86%), Postives = 105/221 (47.51%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V +A A NVTG S+ GL A +TL Q YG+ +G + L C P L++ +++L+L QDP V+ + Y M IP L + QV++ +Q +VLP + + +A + + +V ++ G G ALA + S + I L Y+ + R LH + F AIPS +M C+EWW++E+ +SG+L Sbjct: 74 VTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILW-------RRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGIL 287
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.716e-18 Identity = 63/214 (29.44%), Postives = 105/214 (49.07%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V +A A NVTG S+ +GL A +TL Q YG+ +G + + L C P L++ +L+L QDP V+ + Y IP L + QV++ +Q +VLP + + +A + + ++ + + G+ G ALA S + +LL FY+ + T + F H A+PS +M C+EWW++E+ +SG+L Sbjct: 74 VTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGIL 287
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 2.326e-18 Identity = 63/214 (29.44%), Postives = 103/214 (48.13%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V +A A NVTG S+ GL A +TL Q YG+ +G + L C P L++ +++L+L QDP V+ + Y M IP L + QV++ +Q +VLP + + +A + + ++ + + G G ALA + S + I L Y+ + T + F AIPS +M C+EWW++E+ +SG+L Sbjct: 73 VTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGIL 286
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC323.07c PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.780e-18 Identity = 71/245 (28.98%), Postives = 129/245 (52.65%), Query Frame = 2 Query: 5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSY-TYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCF----HIIVCWVLVFK--FGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718 +++T ++ FS+ G+ +L+TL QA+GA + Y + Y C +I ++ + +PV L+W+ ++ +L+ + QDP VA + RY I GYA+ ++ R+ Q+Q + P+ + LCF +I++ ++LV+ GFG G +A++ + WF I L Y+ +S S + ++ HF+ +M EW ++E+ L +G L + L + SI L+S SL + I F Sbjct: 131 SLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAV-LHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITY----VLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFS-STPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQ--SILLTSTSLLFQIPF 367
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.685e-17 Identity = 59/214 (27.57%), Postives = 107/214 (50.00%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V++A N+TG ++ GL GA +TL Q +G + +G I+ L C P L + + +L+L QDP+V+++ Y + +P L + Q ++ Q+Q ++ P + + F+ + ++L++ G G G A A + S + +ILL Y+ + T + F F A+ S +M C+EWW+FEI + ++G+L Sbjct: 88 VSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVL 301
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 2.329e-17 Identity = 62/219 (28.31%), Postives = 107/219 (48.86%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKL 658 VA+A A NVTG S+ GL A +TL Q +G+ ++G I+ L C P L + + +L+ + Q P VA ++ Y +P L + Q Q R+ Q+Q ++ P + + A + ++ +V + G G A A + S + + L Y+R+ + T +D F A+PS +M C+EWW++EI ++GL+ ++L Sbjct: 92 VALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETEL 310
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.586e-17 Identity = 72/239 (30.13%), Postives = 119/239 (49.79%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718 V +A + NVTG S+ GL A +TL Q++G ++G I+ L C P +++ ++LL+L+ QDP VA +A Y M IP L + Q Q R+ QSQ +++P + +A ++ + L++ G G A A + S +F LL Y+ + T ++ F + AIPS M C+EWW+FEI ++GL+ ++L + L+ S+ Y + F Sbjct: 83 VTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELA--SVAYMVPF 319
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.758e-15 Identity = 65/221 (29.41%), Postives = 102/221 (46.15%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V +A AF NV G S+ GL A +TL Q++G+ +G + L CLP L++ +L+L QDP+V+ + Y M IPGL + ++ Q+Q + P + S + C + + + LV G +G A A S + + L Y+ + LHL+ FF A+PS +M C+EWW++EI + GLL Sbjct: 70 VTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVL-------KKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLL 283
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.048e-14 Identity = 62/214 (28.97%), Postives = 102/214 (47.66%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V +A A NVTG S+ +GL A +TL Q YG+ +G + + L C P L++ +L+L QDP V+ + Y IP L + QV++ +Q +VLP + + +A + + ++ + + G G ALA S + +LL Y+ + T + F AIPS +M C+EWW++E+ +SG+L Sbjct: 74 VTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGIL 287
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.283e-14 Identity = 65/221 (29.41%), Postives = 101/221 (45.70%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643 V + AF NV G S+ GL A +TL Q++G+ +G + L CLP L++ +L+L QDP V+ + YAM IPGL + ++ Q+Q +V P + S + C + + + LV G +G A A + S + L ++ + LHL+ F AIPS +M C+EWW++EI + GLL Sbjct: 99 VTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHI-------VLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL 312 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001112 ID=g.raimondii_cottongen_reftransV1_0001112; Name=g.raimondii_cottongen_reftransV1_0001112; organism=Gossypium raimondii; type=contig; length=720bpback to top |