g.raimondii_cottongen_reftransV1_0001112, g.raimondii_cottongen_reftransV1_0001112 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: V4L0C2_EUTSA (MATE efflux family protein OS=Eutrema salsugineum GN=EUTSA_v10002904mg PE=3 SV=1) HSP 1 Score: 281.567 bits (719), Expect = 2.315e-88 Identity = 140/237 (59.07%), Postives = 181/237 (76.37%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS++ GL GALETL GQAYGA +Y K+G+YTY AI ++PIC + ++W+YM+KLL+ IGQDP+++++A YA+ LIP LF A+ Q RF Q+Q LV+P+++ +L TL F+I VCW LVF FG GS G ALAIS S WFNV++L Y+R+S SCEKTR+ D VK+FFH+ IPSA M CLEWW FE+L+L SGLLPN KLETSVLS+CL+ SLHY I Sbjct: 70 VALATSFANVSGFSIMAGLVGALETLCGQAYGAKRYAKMGTYTYSAIASNVPICFLISIVWIYMEKLLISIGQDPEISKLAGSYAVWLIPALFAQAVQQPLTRFLQTQGLVIPLLYCALTTLLFYIPVCWTLVFTFGLGSNGAALAISLSYWFNVLILAVYVRFSSSCEKTRSFVSHDFVSGVKQFFHYGIPSAAMTCLEWWLFELLILSSGLLPNPKLETSVLSVCLTIGSLHYVI 306
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: U5GCB2_POPTR (MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0005s15040g PE=3 SV=1) HSP 1 Score: 280.796 bits (717), Expect = 5.605e-88 Identity = 146/235 (62.13%), Postives = 190/235 (80.85%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHY 706 V+I +F VTGFSLL+GL G LETL GQAYGA QY KLG+YTYCAII +PIC+PV +LW++MD++L+ IGQDP+++ +A +YA+CLIP LF AI+QS +R+FQS +L+LPM+ S+ TL FHI +CW L+FK+ G KG ALAI S W NVI LG YM +S SC+KTR ++ D+F S+KEFF FA+PSAVM CLEWW+FE+L+L++GLLPNS+LETSVLSICL++ SLH+ Sbjct: 66 VSIGGSFATVTGFSLLFGLTGGLETLCGQAYGAEQYQKLGTYTYCAIISLIPICIPVSILWIFMDRILIEIGQDPEISTVACQYAICLIPALFADAILQSLLRYFQSMNLILPMLLSTSVTLFFHIPLCWALIFKWKLGVKGAALAIDVSYWLNVIFLGLYMGFSSSCKKTRVINWNDIFSSIKEFFCFALPSAVMVCLEWWTFELLILLAGLLPNSQLETSVLSICLTTISLHF 300
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: M5XS17_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015054mg PE=4 SV=1) HSP 1 Score: 277.715 bits (709), Expect = 8.475e-88 Identity = 142/223 (63.68%), Postives = 182/223 (81.61%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETS 667 V+IAT+F +VTGFSLL GL GALETL GQAYGA QY KLG YTY +I+C +C+P+ LLW++ DK+L LIGQDP ++ +A++Y++CLIP LF YA++QS VR+FQ+QSL+LPM++SS A LC H+ +CW L FK GS G ALAISFS WFNV+LLGFYM+YS +CEKTR L +VFL++KEFF FA+PSA+M CLEWWS+E+L+L+SG+L N KLETS Sbjct: 14 VSIATSFTSVTGFSLLSGLVGALETLCGQAYGAEQYQKLGIYTYTSILCLCLVCVPISLLWIFTDKILQLIGQDPLISNVAHKYSLCLIPNLFSYAVLQSLVRYFQTQSLILPMLYSSCAALCLHVPLCWGLTFKLKLGSIGAALAISFSCWFNVLLLGFYMKYSVACEKTRAHVLSIEVFLNIKEFFRFAVPSALMVCLEWWSYEVLILLSGILSNPKLETS 236
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: D7L7F2_ARALL (MATE efflux family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_342752 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.009e-87 Identity = 140/234 (59.83%), Postives = 177/234 (75.64%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLH 703 VA+ATAF NV+GF +++GL GALETL GQAYGA QY K+G+YTY AI+ ++PICL + +LW YMDKLL+ IGQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC LV+ FG GS G ALAI FS WFNV++L Y+R+S SCEKTR D LSVK+FF + IPSA M +EW FE+L+L SGLLPN KLETSVLSICL++ SLH Sbjct: 70 VALATAFANVSGFGIMYGLVGALETLCGQAYGAKQYDKIGTYTYSAIVSNVPICLLISILWFYMDKLLISIGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLTLVYAFGLGSNGAALAIGFSYWFNVLILALYVRFSRSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLH 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: D7L7F3_ARALL (MATE efflux family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_480065 PE=3 SV=1) HSP 1 Score: 279.641 bits (714), Expect = 1.135e-87 Identity = 140/237 (59.07%), Postives = 179/237 (75.53%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFSL++GL GALETL GQAYGA QY K+G+YTY AI+ ++PI + + +LW YMDKLL+ IGQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC VLV+ FG GS G ALAI S WFNV++L Y+R+S +CEKTR D LSVK+FF + IPSA M +EW FE+L+L SGLLPN KLETSVLSICL++ SLHY I Sbjct: 70 VALATSFANVSGFSLMFGLVGALETLCGQAYGAKQYAKIGTYTYSAIVSNIPIVVLISILWFYMDKLLISIGQDPDISKVAGSYAVCLIPALLAQAVQQPLNRFLQTQGLVLPLLYCAITTLLFHIFVCLVLVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLHYVI 306
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: DTX1_ARATH (MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 1.773e-87 Identity = 136/238 (57.14%), Postives = 177/238 (74.37%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715 VA+A +F NVTGFS++ GL GALETL GQAYGA QY K+G+Y Y AI ++PIC + +LW+Y++K+L+ +GQDP+++ IA YA LIP LFG AIV RF +Q LV+P++F+++ TL FH++VCW LVF FG G G A+A S S WF ++L Y+R+S SCEKTR +D S+K+FF + IPSA M CLEWW FEIL+L SGLLPN KLETSVLSICL+ ++LHY IS Sbjct: 67 VALANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVIS 304
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE9_ARATH (MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1) HSP 1 Score: 273.863 bits (699), Expect = 2.643e-87 Identity = 137/237 (57.81%), Postives = 177/237 (74.68%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS+++GL GALETL GQAYGA QY K+G+YT+ AI+ ++PI + + +LW YMDKL V +GQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC +LV+ FG GS G ALAI S WFNV++L Y+R+S SCEKTR D LSVK+FF + IPSA M +EW FE L+L SGLLPN KLETSVLSICL++ SLHY I Sbjct: 70 VALATSFTNVSGFSVMFGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVI 306
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE6_ARATH (MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2) HSP 1 Score: 271.937 bits (694), Expect = 1.198e-86 Identity = 136/237 (57.38%), Postives = 177/237 (74.68%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS+++GL G+LETL+GQAYGA QY K+G+YTY AI ++PIC+ + +LW+YM+KLL+ +GQDP ++ +A YA+ LIP LF +AIV RF +Q LVLP+++ +L TL FHI VCW LV G GS G ALAIS S WF + L Y+R+S SCEKTR +D SVK+FF + +PSA M CLEWW FE+L+L SGLL N KLETSVLSICL++ +LHY I Sbjct: 67 VALATSFTNVSGFSIMFGLVGSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELLILCSGLLQNPKLETSVLSICLTTATLHYVI 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE8_ARATH (MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2) HSP 1 Score: 267.314 bits (682), Expect = 5.783e-85 Identity = 133/234 (56.84%), Postives = 174/234 (74.36%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLH 703 V +ATAF NV+GF +++GL GALETL GQAYGA QY K+G+YT+ AI+ ++PI + + +LW YMDKL V +GQDP ++++A YA+CLIP L A+ Q RF Q+Q LVLP+++ ++ TL FHI VC +LV+ FG GS G ALAI S WFNV++L Y+R+S +CEKTR D LSVK+FF + IPSA M +EW FE+L+L SGLLPN KLETSVLSICL++ SLH Sbjct: 70 VTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLH 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE5_ARATH (MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 8.313e-83 Identity = 136/237 (57.38%), Postives = 176/237 (74.26%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS+L+GL GALETL GQAYGA QY K+G+YTY A ++PIC+ + +LW+Y++KLL+ +GQDP ++ +A YA+ LIP LF +A RF +Q LVLP+++ +L TL FHI VCW V+ FG GS G A+AIS S WF V++L Y+RYS SC+KTR D +K+FFHF +PSA M CLEWW FE+L+L SGLLPN KLETSVLSICL++ SLHY I Sbjct: 67 VALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVI 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE7_ARATH (MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 7.629e-82 Identity = 125/237 (52.74%), Postives = 174/237 (73.42%), Query Frame = 2 Query: 2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712 VA+AT+F NV+GFS+++GL GALETL GQAYGA QY K+G+YTY A+ ++PIC + +LW+Y++KLL+ +GQ+P ++ +A Y++ L+P LF +AI RF +Q LV+ +++S++ TL FHI VCW LVF G GS G A+AIS S WF ++L ++R+ SCEKTR D S+K++F + +PSA + CLEWW FE+L+L SGLLPN KLETSVLSICL+ +LHY I Sbjct: 67 VALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVI 303
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: LAL5_ARATH (MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.104e-37 Identity = 87/236 (36.86%), Postives = 139/236 (58.90%), Query Frame = 2 Query: 8 IATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715 +A ++ VTGF+ + GL GALETL GQ +GA Y LG + + I SL + + +LW + + + +L+ QDP +++ A Y L PGL Y +Q+ +RF Q+Q +V P++ S L +I + LV G G G +A S S W + LGFY+ S ++T T + F V +IPSA M CLE+W+FEILV ++GL+ N ++ TS+++IC++++S+ Y ++ Sbjct: 73 LANSWATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLAGLMRNPEITTSLVAICVNTESISYMLT 308
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: ALF5_ARATH (MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.402e-36 Identity = 80/237 (33.76%), Postives = 141/237 (59.49%), Query Frame = 2 Query: 8 IATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718 +A ++ V+GF+ + GL G+LETL GQ +GA +Y LG + + I SL + + + W + + + L+ QDP +++ A Y PGL Y +Q+ +RF Q+QS++ P++ S L +I +VLV+ G G G +A S S W + LG Y+ S ++T T + F + ++PSA M CLE+W+FEILV ++G++PN ++ TS+++IC++++++ Y +++ Sbjct: 81 LANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTY 317
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.492e-29 Identity = 74/227 (32.60%), Postives = 121/227 (53.30%), Query Frame = 2 Query: 5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICL 685 +IAT + ++ G+ A++T+ GQAYGA QY +G A++ L + + L+ Y +L +GQ +A +A +IP ++ +A+ RF Q+Q++V P+ + SL H ++ W++ FG G AL +SFS W V + G Y+ SP+C++T T F + +F + SAVM CLE W + LV++SGLL N + +SIC+ Sbjct: 92 SIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICM 318
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.730e-21 Identity = 72/238 (30.25%), Postives = 114/238 (47.90%), Query Frame = 2 Query: 5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718 A A F TG+ + G A +TL +GA + +LG I + LP+CL+W Y +L+ + Q P++AE + ++ LIPG GY + +F Q+Q + + L T ++ + ++LV +G G KG LA S W + ILL Y +Y E + K + F ++ VM EWW+FEI+ L++G L L S+ +++D L TI F Sbjct: 48 AFAYMFAMSTGWLIALGGTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKGAEAWNGWN-KRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLAAQ--SVIMTTDQLLNTIPF 282 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 24
Pagesback to topSequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001112 ID=g.raimondii_cottongen_reftransV1_0001112; Name=g.raimondii_cottongen_reftransV1_0001112; organism=Gossypium raimondii; type=contig; length=720bpback to top |