g.raimondii_cottongen_reftransV1_0001112, g.raimondii_cottongen_reftransV1_0001112 (contig) Gossypium raimondii

Overview


Name	g.raimondii_cottongen_reftransV1_0001112
Unique Name	g.raimondii_cottongen_reftransV1_0001112
Type	contig
Organism	Gossypium raimondii (Gossypium raimondii)
Sequence length	720

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Chr01	chromosome	g.raimondii_cottongen_reftransV1_0001112:1..720 . Chr01:8966194..8967208 -

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Gossypium raimondii CottonGen RefTrans V1	2016-11-09
InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL	2016-11-09
Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt	2016-11-09

Homology

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: M4DF61_BRARP (MATE efflux family protein OS=Brassica rapa subsp. pekinensis GN=Bra015133 PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.155e-89
Identity = 144/237 (60.76%), Postives = 182/237 (76.79%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY KLG++TY AI  ++PIC+ + +LW+YMDKLL+ IGQD  ++++A  YA+ LIPGLF  A+ Q   RF Q+Q LVLP+++ +L+TL FHI VCW+LV+ FG GS G ALAIS S WFNV+ L  Y+R+S SCEKTR     D    VK+FF + IPSA M CLEWW FE+L+L SGLLPN KLETSVLS+CLS+ SLHY I
Sbjct:   70 VALATSFANVSGFSIMFGLVGALETLCGQAYGAKQYSKLGTFTYSAIASNVPICVLISILWIYMDKLLISIGQDHDISKVAGSYAVWLIPGLFAQAVQQPVTRFLQTQGLVLPLLYCALSTLLFHIPVCWILVYTFGLGSNGAALAISLSYWFNVLSLACYVRFSSSCEKTRGFVSDDFVSGVKQFFQYGIPSAAMTCLEWWLFELLILSSGLLPNPKLETSVLSVCLSTGSLHYVI 306

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: R0G4X4_9BRAS (MATE efflux family protein OS=Capsella rubella GN=CARUB_v10013560mg PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.219e-89
Identity = 146/237 (61.60%), Postives = 179/237 (75.53%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+ATAF NV+GFS+++GL GALETL GQAYGA QY KLG+YTY AI+ ++P CL + +LW YMDKLLV IGQDP ++ +A  YA+CLIP LF  A+ Q   RF Q+Q LVLP+++ ++ TL FHI VC VLV+KFG GS G ALAIS S WFNV++L  Y+R+S SC +TR     D   S K+FF + IPSA MAC+EW  FE LVL SGLLPN KLETSVLSICL++ SLHY I
Sbjct:   72 VALATAFTNVSGFSIMYGLVGALETLCGQAYGAKQYTKLGTYTYSAIVSNVPFCLLISILWFYMDKLLVSIGQDPDISRVAGSYAVCLIPALFSQAVQQPLTRFLQTQGLVLPLLYCAVTTLLFHIPVCLVLVYKFGLGSNGAALAISLSYWFNVLILALYVRFSSSCVETRGFVSDDFVSSAKQFFQYGIPSAAMACIEWSLFEFLVLSSGLLPNPKLETSVLSICLTTGSLHYVI 308

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A078GR39_BRANA (MATE efflux family protein OS=Brassica napus GN=BnaA07g04760D PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 1.387e-89
Identity = 144/237 (60.76%), Postives = 182/237 (76.79%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY KLG++TY AI  ++PIC+ + +LW+YMDKLL+ IGQD  ++++A  YA+ LIPGLF  A+ Q   RF Q+Q LVLP+++ +L+TL FHI VCW+LV+ FG GS G ALAIS S WFNV+ L  Y+R+S SCEKTR     D    VK+FF + IPSA M CLEWW FE+L+L SGLLPN KLETSVLS+CLS+ SLHY I
Sbjct:   70 VALATSFANVSGFSIMFGLVGALETLCGQAYGAKQYSKLGTFTYSAIASNVPICVLISILWIYMDKLLISIGQDHDISKVAGSYAVWLIPGLFAQAVQQPVTRFLQTQGLVLPLLYCALSTLLFHIPVCWILVYTFGLGSNGAALAISLSYWFNVLSLACYVRFSSSCEKTRGFVSDDFVSGVKQFFQYGIPSAAMTCLEWWLFELLILSSGLLPNPKLETSVLSVCLSTGSLHYVI 306

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: V4S8W0_9ROSI (MATE efflux family protein OS=Citrus clementina GN=CICLE_v10013438mg PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 3.347e-89
Identity = 148/239 (61.92%), Postives = 178/239 (74.48%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            VAIAT+  NVTGFSLL G+ G LETL GQAYGA Q+ KLG +TY AII  + +C  VCLLW++MDKLL LIGQDP ++  A +Y+M LIP LFG AI++   R+FQ+QSL+LPM  SS   LCFHI  CW LVFK   GS G ALA S S W NVILLG YM YS +CEKTR    K+  L++ +FF  AIPSA+M CL+WWS EIL+L+SGLLPN KLETSVLSICL+  +LH+TI +
Sbjct:   63 VAIATSLTNVTGFSLLSGMAGGLETLCGQAYGAAQFRKLGVHTYTAIISLILVCPLVCLLWIFMDKLLPLIGQDPVISHEARKYSMWLIPALFGSAILKPLTRYFQTQSLILPMFASSFLILCFHIPACWTLVFKLELGSMGAALAFSLSTWLNVILLGLYMMYSSACEKTRAPVSKESLLAIGQFFRLAIPSAIMVCLKWWSMEILILLSGLLPNPKLETSVLSICLTISTLHFTIPY 301

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A061FJK5_THECC (MATE efflux family protein OS=Theobroma cacao GN=TCM_036271 PE=3 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 4.378e-89
Identity = 143/240 (59.58%), Postives = 186/240 (77.50%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRT-LHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            V+IAT+F  VTGF  L+G+ GALET+ GQAYGA QY  LG+YTYCAII  + +C P+ +LW++ DK+L+L+GQD  ++ +A+RYA+ LIP LFGYAI+Q+ VR+FQ+QSL+LPM+F+SL  LCFH+  CW LVFK G G+ G A++I+ S W NVI LGFYM+YS  C+KTR+ L +KDV  S + FF FA+PSA M CLEWW+ E+L+ +SGLLPN KLETSVLSIC S   LHY I +
Sbjct:   51 VSIATSFTIVTGFCFLFGMSGALETICGQAYGAEQYQSLGTYTYCAIINLVLVCFPISVLWVFTDKILILVGQDHSISHVAHRYALFLIPALFGYAILQAMVRYFQTQSLILPMLFTSLVALCFHVPFCWTLVFKLGLGTIGAAISIALSTWLNVIWLGFYMKYSSKCDKTRSALSIKDVIKSSRVFFRFAVPSAAMVCLEWWASEVLIFLSGLLPNPKLETSVLSICFSFTYLHYFIPY 290

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D3D4Q8_BRAOL (MATE efflux family protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.671e-89
Identity = 143/237 (60.34%), Postives = 181/237 (76.37%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY KLG++TY AI  ++PIC+ + +LW+YMDKLL+ IGQD  ++++A  YA+ LIPGLF  A+ Q   RF Q+Q LVLP+++ +L+TL FHI VCW+LV+ FG GS G AL IS S WFNV+ L  Y+R+S SCEKTR     D    VK+FF + IPSA M CLEWW FE+L+L SGLLPN KLETSVLS+CLS+ SLHY I
Sbjct:   70 VALATSFANVSGFSIMFGLVGALETLCGQAYGAKQYSKLGTFTYSAIASNVPICVLISILWIYMDKLLISIGQDHDISKVAGSYAVWLIPGLFAQAVQQPVTRFLQTQGLVLPLLYCALSTLLFHIPVCWILVYTFGLGSNGAALGISLSYWFNVLSLACYVRFSSSCEKTRGFVSDDFVSGVKQFFQYGIPSAAMTCLEWWLFELLILSSGLLPNPKLETSVLSVCLSTGSLHYVI 306

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: V4L0C6_EUTSA (MATE efflux family protein OS=Eutrema salsugineum GN=EUTSA_v10002512mg PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 8.946e-89
Identity = 138/238 (57.98%), Postives = 180/238 (75.63%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715
            VA+AT+F NV+GFS++WGL GALETL GQAYGA QY K+G+YTY AI  ++PIC  + +LW+Y+DKLL+ +GQDP ++ +A+ YA  LIP LFG A+     RF  +Q LVLP++++++ATL F+I VCW LV  FG GS G ALAIS S WF  ++L  Y+R+S SCEKTR     D    VK+FFH+ +PSA M CLEWW FE+L+L SGLLPN KLETSVLSICL++++LHY I+
Sbjct:   67 VALATSFTNVSGFSIMWGLVGALETLCGQAYGAKQYEKIGTYTYAAIASNIPICFLISILWIYIDKLLIFLGQDPDISRVADSYAFWLIPALFGQAVAIPLNRFLMTQGLVLPLLYAAVATLLFYIPVCWTLVSVFGLGSNGAALAISMSFWFYALILACYVRFSSSCEKTRGFVSDDFVSCVKQFFHYGVPSAAMLCLEWWLFELLILCSGLLPNPKLETSVLSICLTTETLHYVIA 304

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A061EI42_THECC (MATE efflux family protein OS=Theobroma cacao GN=TCM_019353 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 1.190e-88
Identity = 142/239 (59.41%), Postives = 183/239 (76.57%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            +AIA++  NVTGFS +  + GALETL GQAYGA QY KLG+YT C+++  +P+C+P+C LW++MD+LLVL+GQD +VA +A  Y++ LIPGLF Y  +QS +R+F  Q L+ PM  SS A LC HI VCW+L+ K   G  G AL+   S WFNV+LLG YMRYS SCEK+R L   D+FLS+KEFF FA+PSAVM CLEWWSFE+L+L+SGLLP+S LETSVLSICL++ S HY + +
Sbjct:   64 IAIASSVTNVTGFSFVVIMAGALETLCGQAYGAQQYQKLGTYTNCSMVSIIPVCIPICFLWIFMDQLLVLLGQDFEVAMVACSYSIWLIPGLFAYPFLQSLIRYFHCQGLIPPMFLSSCAALCLHIPVCWILLHKTNLGIIGAALSTGLSFWFNVVLLGIYMRYSSSCEKSRALIFNDIFLSIKEFFSFALPSAVMFCLEWWSFEVLILLSGLLPDSVLETSVLSICLTTTSFHYLVPY 302

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: M4DF59_BRARP (MATE efflux family protein OS=Brassica rapa subsp. pekinensis GN=Bra015131 PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.729e-88
Identity = 144/238 (60.50%), Postives = 180/238 (75.63%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY KLG+YTY AI  ++PIC  +  LW+YMDKLLV +GQDP ++ +A  YA  LIP LFG AIV    RF  +Q LVLP+++ ++ TL FHI VCW+LVFKFG GS G AL+IS S WF  ++L  Y+R+S SCE TRT    D    VK+FFH+ +PSA M CLEWW FE+L+L SGLLPN KLETSVLSICL++++LHY IS
Sbjct:   67 VALATSFTNVSGFSIMYGLAGALETLCGQAYGAKQYEKLGTYTYSAIASNIPICFLISTLWIYMDKLLVSLGQDPDISRVAGSYAFWLIPALFGQAIVIPLTRFLLTQGLVLPLLYCAVTTLMFHISVCWILVFKFGLGSNGAALSISVSFWFYAVILACYVRFSTSCEMTRTFVSDDFVSCVKQFFHYGVPSAAMLCLEWWLFELLILSSGLLPNPKLETSVLSICLTTETLHYVIS 304

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: K4B6L2_SOLLC (MATE efflux family protein OS=Solanum lycopersicum GN=Solyc02g063270.2 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 1.884e-88
Identity = 139/238 (58.40%), Postives = 184/238 (77.31%), Query Frame = 2

Query:    5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            +IAT+ CNVTG+S+L+G+  ALETL GQAYGA QY KLG++TY AIIC   +C+PV +LW++ DKLL+L+GQDP +A+ A +YA+ LIP LF YAI+QS VR+ Q+QSL+LPM+ +++A+LCF + +CW  +FK   G  G AL+I  S W NVILL  Y++YS +CEKTR     DVFL++ +FF  AIPSAVM CLEWWSFE+++L SGLLPN  LETSVLSIC ++ S+HY I +
Sbjct:   67 SIATSLCNVTGYSVLFGMSSALETLCGQAYGAGQYRKLGTFTYSAIICLFLVCIPVSVLWIFTDKLLILMGQDPSIAKEAGKYAIWLIPTLFPYAILQSVVRYLQAQSLILPMLINAVASLCFQVAICWAFIFKLNLGIVGAALSIGLSYWLNVILLMLYVKYSSACEKTRASFSTDVFLTLGDFFRLAIPSAVMVCLEWWSFELIILSSGLLPNPMLETSVLSICFTTTSVHYHIPY 304

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: DTX1_ARATH (MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 1.773e-87
Identity = 136/238 (57.14%), Postives = 177/238 (74.37%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715
            VA+A +F NVTGFS++ GL GALETL GQAYGA QY K+G+Y Y AI  ++PIC  + +LW+Y++K+L+ +GQDP+++ IA  YA  LIP LFG AIV    RF  +Q LV+P++F+++ TL FH++VCW LVF FG G  G A+A S S WF  ++L  Y+R+S SCEKTR    +D   S+K+FF + IPSA M CLEWW FEIL+L SGLLPN KLETSVLSICL+ ++LHY IS
Sbjct:   67 VALANSFTNVTGFSIMCGLVGALETLCGQAYGAKQYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFGQAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEILILCSGLLPNPKLETSVLSICLTIETLHYVIS 304

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE9_ARATH (MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.643e-87
Identity = 137/237 (57.81%), Postives = 177/237 (74.68%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY K+G+YT+ AI+ ++PI + + +LW YMDKL V +GQDP ++++A  YA+CLIP L   A+ Q   RF Q+Q LVLP+++ ++ TL FHI VC +LV+ FG GS G ALAI  S WFNV++L  Y+R+S SCEKTR     D  LSVK+FF + IPSA M  +EW  FE L+L SGLLPN KLETSVLSICL++ SLHY I
Sbjct:   70 VALATSFTNVSGFSVMFGLAGALETLCGQAYGAKQYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVI 306

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE6_ARATH (MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2)

HSP 1 Score: 271.937 bits (694), Expect = 1.198e-86
Identity = 136/237 (57.38%), Postives = 177/237 (74.68%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL G+LETL+GQAYGA QY K+G+YTY AI  ++PIC+ + +LW+YM+KLL+ +GQDP ++ +A  YA+ LIP LF +AIV    RF  +Q LVLP+++ +L TL FHI VCW LV   G GS G ALAIS S WF  + L  Y+R+S SCEKTR    +D   SVK+FF + +PSA M CLEWW FE+L+L SGLL N KLETSVLSICL++ +LHY I
Sbjct:   67 VALATSFTNVSGFSIMFGLVGSLETLSGQAYGAKQYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPTLFAHAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSFWFFAMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELLILCSGLLQNPKLETSVLSICLTTATLHYVI 303

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE8_ARATH (MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.783e-85
Identity = 133/234 (56.84%), Postives = 174/234 (74.36%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLH 703
            V +ATAF NV+GF +++GL GALETL GQAYGA QY K+G+YT+ AI+ ++PI + + +LW YMDKL V +GQDP ++++A  YA+CLIP L   A+ Q   RF Q+Q LVLP+++ ++ TL FHI VC +LV+ FG GS G ALAI  S WFNV++L  Y+R+S +CEKTR     D  LSVK+FF + IPSA M  +EW  FE+L+L SGLLPN KLETSVLSICL++ SLH
Sbjct:   70 VTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTTIEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLH 303

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE5_ARATH (MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 8.313e-83
Identity = 136/237 (57.38%), Postives = 176/237 (74.26%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+L+GL GALETL GQAYGA QY K+G+YTY A   ++PIC+ + +LW+Y++KLL+ +GQDP ++ +A  YA+ LIP LF +A      RF  +Q LVLP+++ +L TL FHI VCW  V+ FG GS G A+AIS S WF V++L  Y+RYS SC+KTR     D    +K+FFHF +PSA M CLEWW FE+L+L SGLLPN KLETSVLSICL++ SLHY I
Sbjct:   67 VALATSFTNVSGFSILFGLAGALETLCGQAYGAKQYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFAHAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFYVVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELLILCSGLLPNPKLETSVLSICLTTASLHYVI 303

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: MATE7_ARATH (MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 7.629e-82
Identity = 125/237 (52.74%), Postives = 174/237 (73.42%), Query Frame = 2

Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY K+G+YTY A+  ++PIC  + +LW+Y++KLL+ +GQ+P ++ +A  Y++ L+P LF +AI     RF  +Q LV+ +++S++ TL FHI VCW LVF  G GS G A+AIS S WF  ++L  ++R+  SCEKTR     D   S+K++F + +PSA + CLEWW FE+L+L SGLLPN KLETSVLSICL+  +LHY I
Sbjct:   67 VALATSFTNVSGFSIMFGLVGALETLCGQAYGAEQYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFAHAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFYAVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELLILCSGLLPNPKLETSVLSICLTIGTLHYVI 303

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: LAL5_ARATH (MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.104e-37
Identity = 87/236 (36.86%), Postives = 139/236 (58.90%), Query Frame = 2

Query:    8 IATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715
            +A ++  VTGF+ + GL GALETL GQ +GA  Y  LG +   + I SL   + + +LW + + + +L+ QDP +++ A  Y   L PGL  Y  +Q+ +RF Q+Q +V P++  S   L  +I   + LV   G G  G  +A S S W   + LGFY+  S   ++T T    + F  V      +IPSA M CLE+W+FEILV ++GL+ N ++ TS+++IC++++S+ Y ++
Sbjct:   73 LANSWATVTGFAFMTGLSGALETLCGQGFGAKSYRMLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGFLQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISLWIAFVSLGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEILVFLAGLMRNPEITTSLVAICVNTESISYMLT 308

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: ALF5_ARATH (MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.402e-36
Identity = 80/237 (33.76%), Postives = 141/237 (59.49%), Query Frame = 2

Query:    8 IATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            +A ++  V+GF+ + GL G+LETL GQ +GA +Y  LG +   + I SL   + + + W + + +  L+ QDP +++ A  Y     PGL  Y  +Q+ +RF Q+QS++ P++  S   L  +I   +VLV+  G G  G  +A S S W   + LG Y+  S   ++T T    + F  +      ++PSA M CLE+W+FEILV ++G++PN ++ TS+++IC++++++ Y +++
Sbjct:   81 LANSWATVSGFAFMVGLSGSLETLCGQGFGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAPGLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSISLWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEILVFLAGVMPNPEINTSLVAICVNTEAISYMLTY 317

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.492e-29
Identity = 74/227 (32.60%), Postives = 121/227 (53.30%), Query Frame = 2

Query:    5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICL 685
            +IAT       + ++ G+  A++T+ GQAYGA QY  +G     A++  L   + +  L+ Y   +L  +GQ   +A     +A  +IP ++ +A+     RF Q+Q++V P+ + SL     H ++ W++     FG  G AL +SFS W  V + G Y+  SP+C++T T      F  +  +F   + SAVM CLE W  + LV++SGLL N  +    +SIC+
Sbjct:   92 SIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVIISGLLSNPTISLDAISICM 318

[Close]

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: YAO6_SCHPO (Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.730e-21
Identity = 72/238 (30.25%), Postives = 114/238 (47.90%), Query Frame = 2

Query:    5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            A A  F   TG+ +  G   A +TL    +GA +  +LG       I    + LP+CL+W Y   +L+ + Q P++AE + ++   LIPG  GY   +   +F Q+Q +     +  L T   ++ + ++LV  +G G KG  LA   S W + ILL  Y +Y    E     + K    +   F   ++   VM   EWW+FEI+ L++G L    L     S+ +++D L  TI F
Sbjct:   48 AFAYMFAMSTGWLIALGGTTAFDTLGSNLWGAGKKQELGILLQTGFIVLSILYLPICLVWWYSKPILIFLHQTPELAEASQKFLRYLIPGGLGYVCFELLKKFLQTQEITRAGSYILLVTSPLNVALNFLLVHYYGLGLKGAPLATGLSYWLSFILLTQYAKYVKGAEAWNGWN-KRCLENFGPFVKLSLLGIVMVGTEWWAFEIVALVAGKLGAVPLAAQ--SVIMTTDQLLNTIPF 282

The following BLAST results are available for this feature:

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot

BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25


Match Name	E-value	Identity	Description
M4DF61_BRARP	1.155e-89	60.76	MATE efflux family protein OS=Brassica rapa subsp....	[more]
R0G4X4_9BRAS	1.219e-89	61.60	MATE efflux family protein OS=Capsella rubella GN=...	[more]
A0A078GR39_BRANA	1.387e-89	60.76	MATE efflux family protein OS=Brassica napus GN=Bn...	[more]
V4S8W0_9ROSI	3.347e-89	61.92	MATE efflux family protein OS=Citrus clementina GN...	[more]
A0A061FJK5_THECC	4.378e-89	59.58	MATE efflux family protein OS=Theobroma cacao GN=T...	[more]
A0A0D3D4Q8_BRAOL	4.671e-89	60.34	MATE efflux family protein OS=Brassica oleracea va...	[more]
V4L0C6_EUTSA	8.946e-89	57.98	MATE efflux family protein OS=Eutrema salsugineum ...	[more]
A0A061EI42_THECC	1.190e-88	59.41	MATE efflux family protein OS=Theobroma cacao GN=T...	[more]
M4DF59_BRARP	1.729e-88	60.50	MATE efflux family protein OS=Brassica rapa subsp....	[more]
K4B6L2_SOLLC	1.884e-88	58.40	MATE efflux family protein OS=Solanum lycopersicum...	[more]

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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 24


Match Name	E-value	Identity	Description
DTX1_ARATH	1.773e-87	57.14	MATE efflux family protein DTX1 OS=Arabidopsis tha...	[more]
MATE9_ARATH	2.643e-87	57.81	MATE efflux family protein 9 OS=Arabidopsis thalia...	[more]
MATE6_ARATH	1.198e-86	57.38	MATE efflux family protein 6 OS=Arabidopsis thalia...	[more]
MATE8_ARATH	5.783e-85	56.84	MATE efflux family protein 8 OS=Arabidopsis thalia...	[more]
MATE5_ARATH	8.313e-83	57.38	MATE efflux family protein 5 OS=Arabidopsis thalia...	[more]
MATE7_ARATH	7.629e-82	52.74	MATE efflux family protein 7 OS=Arabidopsis thalia...	[more]
LAL5_ARATH	2.104e-37	36.86	MATE efflux family protein LAL5 OS=Arabidopsis tha...	[more]
ALF5_ARATH	4.402e-36	33.76	MATE efflux family protein ALF5 OS=Arabidopsis tha...	[more]
TT12_ARATH	8.492e-29	32.60	Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia...	[more]
YAO6_SCHPO	2.730e-21	30.25	Uncharacterized transporter C11D3.06 OS=Schizosacc...	[more]

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Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>g.raimondii_cottongen_reftransV1_0001112 ID=g.raimondii_cottongen_reftransV1_0001112; Name=g.raimondii_cottongen_reftransV1_0001112; organism=Gossypium raimondii; type=contig; length=720bp
TGTTGCCATCGCCACAGCTTTCTGCAATGTCACTGGCTTTAGTCTCCTTT
GGGGACTTTGTGGTGCACTCGAAACCCTAAACGGACAAGCATATGGGGCA
ACGCAATACTATAAACTAGGAAGCTACACTTATTGTGCCATAATATGTTC
CCTTCCAATTTGTCTCCCGGTGTGTCTCCTATGGATGTATATGGACAAAC
TATTAGTGCTAATAGGTCAAGACCCTCAAGTTGCAGAGATAGCTAATAGA
TACGCCATGTGTCTCATACCTGGATTATTTGGTTACGCCATTGTTCAATC
ACAAGTTCGTTTCTTCCAATCCCAGAGCTTGGTTCTTCCTATGATGTTTA
GTTCTCTTGCAACATTGTGTTTCCATATAATTGTTTGTTGGGTTTTGGTA
TTCAAATTTGGGTTTGGAAGCAAAGGAGGGGCATTGGCTATCAGTTTCTC
GAATTGGTTTAATGTTATATTGCTTGGGTTTTACATGAGATACTCACCTT
CATGTGAGAAAACCCGAACCCTCCATTTGAAAGATGTTTTCTTGAGTGTC
AAGGAGTTCTTTCATTTTGCCATACCTTCTGCAGTAATGGCTTGCCTCGA
ATGGTGGTCGTTCGAGATTCTTGTATTAATGTCTGGACTTCTGCCAAATT
CCAAGCTTGAAACATCGGTTCTTTCTATATGCCTTTCAAGTGATTCTTTG
CATTATACTATATCGTTTGG

Search form

g.raimondii_cottongen_reftransV1_0001112, g.raimondii_cottongen_reftransV1_0001112 (contig) Gossypium raimondii

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