g.raimondii_cottongen_reftransV1_0001112, g.raimondii_cottongen_reftransV1_0001112 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001112
Unique Nameg.raimondii_cottongen_reftransV1_0001112
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length720
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr01chromosomeg.raimondii_cottongen_reftransV1_0001112:1..720 .
Chr01:8966194..8967208 -
Homology
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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A061EHE6_THECC (MATE efflux family protein OS=Theobroma cacao GN=TCM_019339 PE=3 SV=1)

HSP 1 Score: 384.03 bits (985), Expect = 1.713e-128
Identity = 203/238 (85.29%), Postives = 213/238 (89.50%), Query Frame = 2 
Query:    5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            AIAT+FCNVTGFSLLWGLCGALETLNGQAYGA QY KLGSYTYCAII +LPICLPVCLLWMYMDKLLVLIGQDPQ A +A RY+M LIP LF YAI+QSQVRFFQSQSLVLPM+F SLATLCFHI VCWVLVFK G G+ G A+AISFS WFNVILLG YMRYS SCEKTR L+L DV LSVKEFF FAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSS SLHY + F
Sbjct:   66 AIATSFCNVTGFSLLWGLCGALETLNGQAYGAMQYQKLGSYTYCAIISTLPICLPVCLLWMYMDKLLVLIGQDPQAAVVACRYSMWLIPALFAYAILQSQVRFFQSQSLVLPMLFISLATLCFHIPVCWVLVFKSGLGNTGAAMAISFSYWFNVILLGLYMRYSSSCEKTRILYLNDVILSVKEFFQFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSTSLHYNVPF 303
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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D2TXY4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058000 PE=4 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 8.381e-107
Identity = 171/239 (71.55%), Postives = 200/239 (83.68%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            VAIAT+FCNVTGFSLL G  GA+ETL GQAYGA QY K GSYTYCAI+C +PICLPVCLL ++MDKLLVL GQDP++A++A RY + LIP LF Y+I+QSQVR+FQ+QSL+LPM+F SLATLCFH+ VCWVLVFK G  + G AL+I  S W NVILLGF+MRYS SCEKTR   LKDVF SVK FF F IPSAVM CLEWWSFEIL+L+SGLLP+++L+TSV+SIC +S SLHY I F
Sbjct:   60 VAIATSFCNVTGFSLLSGFAGAMETLCGQAYGAKQYQKFGSYTYCAIMCLIPICLPVCLLSVFMDKLLVLTGQDPEIAKMAWRYGIWLIPALFPYSILQSQVRYFQTQSLILPMLFVSLATLCFHVPVCWVLVFKSGLENTGAALSIGLSYWLNVILLGFHMRYSASCEKTRCFILKDVFSSVKHFFRFGIPSAVMLCLEWWSFEILILLSGLLPDAELQTSVISICFTSSSLHYYIPF 298
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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D2T139_GOSRA (MATE efflux family protein OS=Gossypium raimondii GN=B456_008G058000 PE=3 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 3.069e-106
Identity = 171/239 (71.55%), Postives = 200/239 (83.68%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            VAIAT+FCNVTGFSLL G  GA+ETL GQAYGA QY K GSYTYCAI+C +PICLPVCLL ++MDKLLVL GQDP++A++A RY + LIP LF Y+I+QSQVR+FQ+QSL+LPM+F SLATLCFH+ VCWVLVFK G  + G AL+I  S W NVILLGF+MRYS SCEKTR   LKDVF SVK FF F IPSAVM CLEWWSFEIL+L+SGLLP+++L+TSV+SIC +S SLHY I F
Sbjct:   60 VAIATSFCNVTGFSLLSGFAGAMETLCGQAYGAKQYQKFGSYTYCAIMCLIPICLPVCLLSVFMDKLLVLTGQDPEIAKMAWRYGIWLIPALFPYSILQSQVRYFQTQSLILPMLFVSLATLCFHVPVCWVLVFKSGLENTGAALSIGLSYWLNVILLGFHMRYSASCEKTRCFILKDVFSSVKHFFRFGIPSAVMLCLEWWSFEILILLSGLLPDAELQTSVISICFTSSSLHYYIPF 298
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D2SVK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G058000 PE=4 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.045e-93
Identity = 153/217 (70.51%), Postives = 181/217 (83.41%), Query Frame = 2 
Query:   68 LETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            +ETL GQAYGA QY K GSYTYCAI+C +PICLPVCLL ++MDKLLVL GQDP++A++A RY + LIP LF Y+I+QSQVR+FQ+QSL+LPM+F SLATLCFH+ VCWVLVFK G  + G AL+I  S W NVILLGF+MRYS SCEKTR   LKDVF SVK FF F IPSAVM CLEWWSFEIL+L+SGLLP+++L+TSV+SIC +S SLHY I F
Sbjct:    1 METLCGQAYGAKQYQKFGSYTYCAIMCLIPICLPVCLLSVFMDKLLVLTGQDPEIAKMAWRYGIWLIPALFPYSILQSQVRYFQTQSLILPMLFVSLATLCFHVPVCWVLVFKSGLENTGAALSIGLSYWLNVILLGFHMRYSASCEKTRCFILKDVFSSVKHFFRFGIPSAVMLCLEWWSFEILILLSGLLPDAELQTSVISICFTSSSLHYYIPF 217
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: U7DYD6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0229s00260g PE=4 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.390e-92
Identity = 145/235 (61.70%), Postives = 190/235 (80.85%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHY 706
            V+I  +F  VTGFSLL+GL G LETL GQAYGA QY K G+YTYCAII  LPIC+PV +LW++MD++L+ IGQDP+++ +A RYA CLIP LF YA++QS +R++QSQ L+LPM+FS+ ATLCFHI +CW L+FK+  GS G AL+I  S W NV+ L  YM +S SC+KTR ++   +F S+KEFF FA+PSAVM CLEWW+FE+L+L++GLLP+S+LETSVLSICL++ SLH+
Sbjct:   62 VSIGGSFAGVTGFSLLFGLAGGLETLCGQAYGAGQYQKFGTYTYCAIISLLPICVPVSILWIFMDRILIAIGQDPEISTVACRYATCLIPALFAYAVLQSLLRYYQSQGLILPMLFSTCATLCFHIPLCWALIFKWELGSTGAALSIDVSYWLNVVFLALYMGFSSSCKKTRVIYWNHIFSSIKEFFRFALPSAVMVCLEWWTFELLILLAGLLPDSQLETSVLSICLATTSLHF 296
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D3D4R0_BRAOL (MATE efflux family protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 3.674e-91
Identity = 144/238 (60.50%), Postives = 180/238 (75.63%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTIS 715
            VA+AT+F NV+GFS+++GL GALETL GQAYGA QY KLG+YTY AI  ++PIC  +  LW+YMDKLLV +GQDP ++ +A  YA  LIP LFG AIV    RF  +Q LVLP+++ ++ TL FHI VCW+LVFKFG GS G AL+IS S WF  ++L  Y+R+S SCE TRT    D    VK+FFH+ +PSA M CLEWW FE+L+L SGLLPN KLETSVLSICL++++LHY IS
Sbjct:   67 VALATSFTNVSGFSIMYGLAGALETLCGQAYGAKQYEKLGTYTYSAIASNIPICFLISTLWIYMDKLLVSLGQDPDISRVAGSYAFSLIPALFGQAIVIPLTRFLLTQGLVLPLLYCAVTTLLFHISVCWILVFKFGLGSNGAALSISVSFWFYAVILACYVRFSTSCEMTRTFVSDDFVSCVKQFFHYGVPSAAMLCLEWWLFELLILSSGLLPNPKLETSVLSICLTTETLHYVIS 304
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: R0G4M3_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10013560mg PE=4 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 1.029e-90
Identity = 146/237 (61.60%), Postives = 179/237 (75.53%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTI 712
            VA+ATAF NV+GFS+++GL GALETL GQAYGA QY KLG+YTY AI+ ++P CL + +LW YMDKLLV IGQDP ++ +A  YA+CLIP LF  A+ Q   RF Q+Q LVLP+++ ++ TL FHI VC VLV+KFG GS G ALAIS S WFNV++L  Y+R+S SC +TR     D   S K+FF + IPSA MAC+EW  FE LVL SGLLPN KLETSVLSICL++ SLHY I
Sbjct:   72 VALATAFTNVSGFSIMYGLVGALETLCGQAYGAKQYTKLGTYTYSAIVSNVPFCLLISILWFYMDKLLVSIGQDPDISRVAGSYAVCLIPALFSQAVQQPLTRFLQTQGLVLPLLYCAVTTLLFHIPVCLVLVYKFGLGSNGAALAISLSYWFNVLILALYVRFSSSCVETRGFVSDDFVSSAKQFFQYGIPSAAMACIEWSLFEFLVLSSGLLPNPKLETSVLSICLTTGSLHYVI 308
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: A0A0D2N775_GOSRA (MATE efflux family protein OS=Gossypium raimondii GN=B456_001G084200 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 1.065e-90
Identity = 155/239 (64.85%), Postives = 195/239 (81.59%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            VAIAT+F NVTGFSLL+G+ GALETL GQAYGA QY KLG+YTYC+I+  + ICLPV L W++MD+ L+ +GQDPQ++ +A+ Y++ LIP LF  AI+QS VR+FQSQS +LP+  SS AT+CFH+ +CWVLV K   G  G ALAI+ + WFNVI+LGFYMR+S SCE TRT+ + DVF S+KEF  FA+PSAVM CLEWWSFE+LVL+SGLLP+S+LETSVLSICLS+ SLHY + +
Sbjct:   62 VAIATSFTNVTGFSLLFGMAGALETLGGQAYGAGQYQKLGTYTYCSILSLITICLPVSLFWIFMDEFLIFMGQDPQISHVASIYSIWLIPALFADAILQSLVRYFQSQSQILPLFLSSCATICFHVPLCWVLVHKTNLGYVGAALAITLALWFNVIVLGFYMRWSASCESTRTVIVGDVFASIKEFLGFALPSAVMCCLEWWSFELLVLLSGLLPDSELETSVLSICLSTTSLHYFVPY 300
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: B9SPZ5_RICCO (MATE efflux family protein OS=Ricinus communis GN=RCOM_0467100 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 2.235e-90
Identity = 147/239 (61.51%), Postives = 190/239 (79.50%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            V++A++F N TGF+LL GL GALETL GQAYGA QY K GSY YCAII  LPICLP  +LW++MD++L+ IG DP+++  A RY++ LIP LFG+AI+QS VR+FQ+QSL+LPM+ SS ATL  HI +CW LVFK+ FG+ GGA++I  S W NVI L  YMR+S SCEKTR L  KDVF S+ EF+ FA+PSAVM CLEWW+FE+L L++G LPNSKLETSVLSIC+++ +++Y + +
Sbjct:   57 VSVASSFTNATGFALLIGLSGALETLCGQAYGAGQYKKFGSYLYCAIISLLPICLPASILWIFMDRILISIGLDPKISMEACRYSIGLIPALFGFAILQSLVRYFQTQSLILPMLISSCATLSAHIPLCWALVFKWEFGAIGGAMSIGLSYWLNVIFLACYMRWSSSCEKTRVLCWKDVFSSISEFWRFALPSAVMVCLEWWTFELLTLLAGFLPNSKLETSVLSICITTTTVNYYVQY 295
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Match: U5FG70_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s10450g PE=4 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 6.210e-90
Identity = 142/220 (64.55%), Postives = 176/220 (80.00%), Query Frame = 2 
Query:   20 FCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSI 679
            F +VTGFSLL+GL GALETL GQAYGA QY  + +YTYCAII  + +CLP+  LWM+ DKLL+LIGQDP ++ +A +Y++CLIP LF YAI+Q+ +R+FQ+QSL+LPM+FSS A+LCFHI +CW LVFK   G  G ALAIS S W NVILLG YM+ S  CEKTR++  KDVF  ++EFF FA+PSAVM CLEWWS+E+L+L+SGLL N K ETSVLSI
Sbjct:   23 FTSVTGFSLLFGLAGALETLCGQAYGAEQYQTVRTYTYCAIISLILVCLPISFLWMFTDKLLILIGQDPSISHVARKYSICLIPNLFSYAILQALIRYFQTQSLILPMLFSSFASLCFHITLCWALVFKAEMGIIGAALAISLSYWLNVILLGLYMKCSSECEKTRSVFSKDVFFGIREFFRFAVPSAVMTCLEWWSYEVLILLSGLLRNPKEETSVLSI 242
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.334e-19
Identity = 66/221 (29.86%), Postives = 105/221 (47.51%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +A A  NVTG S+  GL  A +TL  Q YG+     +G       +  L  C P   L++  +++L+L  QDP V+ +   Y M  IP L    +   QV++  +Q +VLP + + +A    + +  +V ++    G  G ALA + S +   I L  Y+ +       R LH         +       F   AIPS +M C+EWW++E+   +SG+L
Sbjct:   74 VTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMIFIPALPAAFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILW-------RRLHQATWGGWSWECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGIL 287
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_PONAB (Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.716e-18
Identity = 63/214 (29.44%), Postives = 105/214 (49.07%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +A A  NVTG S+ +GL  A +TL  Q YG+     +G     + +  L  C P   L++    +L+L  QDP V+ +   Y    IP L    +   QV++  +Q +VLP + + +A    + +  ++ + +   G+ G ALA   S +   +LL FY+      + T      +       F H A+PS +M C+EWW++E+   +SG+L
Sbjct:   74 VTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALILLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGAIGSALANLISQYTLALLLFFYILGKKLHQATWGGWSLECLQDWASFLHLAVPSMLMLCMEWWAYEVGSFLSGIL 287
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.326e-18
Identity = 63/214 (29.44%), Postives = 103/214 (48.13%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +A A  NVTG S+  GL  A +TL  Q YG+     +G       +  L  C P   L++  +++L+L  QDP V+ +   Y M  IP L    +   QV++  +Q +VLP + + +A    + +  ++ + +   G  G ALA + S +   I L  Y+ +      T      +       F   AIPS +M C+EWW++E+   +SG+L
Sbjct:   73 VTLAIAVINVTGISVGHGLSSACDTLISQTYGSQNLKHVGVILQRGTLILLLCCFPCWALFINTEQILLLFRQDPDVSRLTQTYVMVFIPALPAAFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWSWECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGIL 286
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.780e-18
Identity = 71/245 (28.98%), Postives = 129/245 (52.65%), Query Frame = 2 
Query:    5 AIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSY-TYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCF----HIIVCWVLVFK--FGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            +++T    ++ FS+  G+  +L+TL  QA+GA + Y +  Y   C +I ++ + +PV L+W+ ++ +L+ + QDP VA +  RY    I    GYA+ ++  R+ Q+Q +  P+ +     LCF    +I++ ++LV+    GFG  G  +A++ + WF  I L  Y+ +S S         +    ++    HF+    +M   EW ++E+  L +G L  + L +   SI L+S SL + I F
Sbjct:  131 SLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYLQRCLLILAV-LHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITY----VLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFS-STPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQ--SILLTSTSLLFQIPF 367
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.685e-17
Identity = 59/214 (27.57%), Postives = 107/214 (50.00%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V++A    N+TG ++  GL GA +TL  Q +G +    +G      I+  L  C P   L +  + +L+L  QDP+V+++   Y +  +P L    + Q   ++ Q+Q ++ P + +      F+ +  ++L++  G G  G A A + S +  +ILL  Y+ +      T     +  F     F   A+ S +M C+EWW+FEI + ++G+L
Sbjct:   88 VSLAITIINITGVAVGTGLAGACDTLISQTFGGSNLKLVGIILQRGILILLLFCFPCWALLINTESILLLFRQDPEVSKLTQIYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWSQACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVL 301
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.329e-17
Identity = 62/219 (28.31%), Postives = 107/219 (48.86%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKL 658
            VA+A A  NVTG S+  GL  A +TL  Q +G+    ++G      I+  L  C P   L +  + +L+ + Q P VA ++  Y    +P L    + Q Q R+ Q+Q ++ P + +  A    + ++ +V +     G  G A A + S +   + L  Y+R+    + T     +D       F   A+PS +M C+EWW++EI   ++GL+  ++L
Sbjct:   92 VALAIAVINVTGISIGSGLASACDTLISQTFGSNNLKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETEL 310
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.586e-17
Identity = 72/239 (30.13%), Postives = 119/239 (49.79%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLLPNSKLETSVLSICLSSDSLHYTISF 718
            V +A +  NVTG S+  GL  A +TL  Q++G     ++G      I+  L  C P   +++  ++LL+L+ QDP VA +A  Y M  IP L    + Q Q R+ QSQ +++P +   +A    ++ +   L++    G  G A A + S +F   LL  Y+ +      T     ++ F     +   AIPS  M C+EWW+FEI   ++GL+  ++L    +   L+  S+ Y + F
Sbjct:   83 VTLAVSVVNVTGISVGTGLASACDTLMSQSFGGKNLKRVGVILQRGILILLLCCFPCWAIFLNTERLLLLLRQDPDVARLAQVYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWTRECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTELGAQAVIYELA--SVAYMVPF 319
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.758e-15
Identity = 65/221 (29.41%), Postives = 102/221 (46.15%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +A AF NV G S+  GL  A +TL  Q++G+     +G       +  L  CLP   L++    +L+L  QDP+V+ +   Y M  IPGL    +     ++ Q+Q +  P + S +   C + +  + LV     G +G A A   S +   + L  Y+         + LHL+               FF  A+PS +M C+EWW++EI   + GLL
Sbjct:   70 VTLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVL-------KKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLL 283
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.048e-14
Identity = 62/214 (28.97%), Postives = 102/214 (47.66%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLKDVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +A A  NVTG S+ +GL  A +TL  Q YG+     +G     + +  L  C P   L++    +L+L  QDP V+ +   Y    IP L    +   QV++  +Q +VLP + + +A    + +  ++ + +   G  G ALA   S +   +LL  Y+      + T      +       F   AIPS +M C+EWW++E+   +SG+L
Sbjct:   74 VTLAIAVINVTGVSVGFGLSSACDTLISQTYGSQNLKHVGVILQRSALVLLLCCFPCWALFLNTQHILLLFRQDPDVSRLTQTYVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWSLECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGIL 287
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.283e-14
Identity = 65/221 (29.41%), Postives = 101/221 (45.70%), Query Frame = 2 
Query:    2 VAIATAFCNVTGFSLLWGLCGALETLNGQAYGATQYYKLGSYTYCAIICSLPICLPVCLLWMYMDKLLVLIGQDPQVAEIANRYAMCLIPGLFGYAIXXXXXXXXXXXXLVLPMMFSSLATLCFHIIVCWVLVFKFGFGSKGGALAISFSNWFNVILLGFYMRYSPSCEKTRTLHLK-------DVFLSVKEFFHFAIPSAVMACLEWWSFEILVLMSGLL 643
            V +  AF NV G S+  GL  A +TL  Q++G+     +G       +  L  CLP   L++    +L+L  QDP V+ +   YAM  IPGL    +     ++ Q+Q +V P + S +   C + +  + LV     G +G A A + S +     L  ++         + LHL+               F   AIPS +M C+EWW++EI   + GLL
Sbjct:   99 VTLGVAFVNVCGVSVGAGLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHI-------VLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL 312
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A061EHE6_THECC1.713e-12885.29MATE efflux family protein OS=Theobroma cacao GN=T... [more]
A0A0D2TXY4_GOSRA8.381e-10771.55Uncharacterized protein OS=Gossypium raimondii GN=... [more]
A0A0D2T139_GOSRA3.069e-10671.55MATE efflux family protein OS=Gossypium raimondii ... [more]
A0A0D2SVK7_GOSRA1.045e-9370.51Uncharacterized protein OS=Gossypium raimondii GN=... [more]
U7DYD6_POPTR9.390e-9261.70Uncharacterized protein (Fragment) OS=Populus tric... [more]
A0A0D3D4R0_BRAOL3.674e-9160.50MATE efflux family protein OS=Brassica oleracea va... [more]
R0G4M3_9BRAS1.029e-9061.60Uncharacterized protein OS=Capsella rubella GN=CAR... [more]
A0A0D2N775_GOSRA1.065e-9064.85MATE efflux family protein OS=Gossypium raimondii ... [more]
B9SPZ5_RICCO2.235e-9061.51MATE efflux family protein OS=Ricinus communis GN=... [more]
U5FG70_POPTR6.210e-9064.55Uncharacterized protein (Fragment) OS=Populus tric... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001112 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
S47A1_MOUSE4.334e-1929.86Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_PONAB1.716e-1829.44Multidrug and toxin extrusion protein 1 OS=Pongo a... [more]
S47A1_RAT2.326e-1829.44Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]
YL47_SCHPO2.780e-1828.98Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A1_XENTR1.685e-1727.57Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A1_DANRE2.329e-1728.31Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_MOUSE7.586e-1730.13Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A2_PONAB9.758e-1529.41Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_HUMAN1.048e-1428.97Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A2_RABIT3.283e-1429.41Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]

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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001112 ID=g.raimondii_cottongen_reftransV1_0001112; Name=g.raimondii_cottongen_reftransV1_0001112; organism=Gossypium raimondii; type=contig; length=720bp
TGTTGCCATCGCCACAGCTTTCTGCAATGTCACTGGCTTTAGTCTCCTTT
GGGGACTTTGTGGTGCACTCGAAACCCTAAACGGACAAGCATATGGGGCA
ACGCAATACTATAAACTAGGAAGCTACACTTATTGTGCCATAATATGTTC
CCTTCCAATTTGTCTCCCGGTGTGTCTCCTATGGATGTATATGGACAAAC
TATTAGTGCTAATAGGTCAAGACCCTCAAGTTGCAGAGATAGCTAATAGA
TACGCCATGTGTCTCATACCTGGATTATTTGGTTACGCCATTGTTCAATC
ACAAGTTCGTTTCTTCCAATCCCAGAGCTTGGTTCTTCCTATGATGTTTA
GTTCTCTTGCAACATTGTGTTTCCATATAATTGTTTGTTGGGTTTTGGTA
TTCAAATTTGGGTTTGGAAGCAAAGGAGGGGCATTGGCTATCAGTTTCTC
GAATTGGTTTAATGTTATATTGCTTGGGTTTTACATGAGATACTCACCTT
CATGTGAGAAAACCCGAACCCTCCATTTGAAAGATGTTTTCTTGAGTGTC
AAGGAGTTCTTTCATTTTGCCATACCTTCTGCAGTAATGGCTTGCCTCGA
ATGGTGGTCGTTCGAGATTCTTGTATTAATGTCTGGACTTCTGCCAAATT
CCAAGCTTGAAACATCGGTTCTTTCTATATGCCTTTCAAGTGATTCTTTG
CATTATACTATATCGTTTGG
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