g.raimondii_cottongen_reftransV1_0001033, g.raimondii_cottongen_reftransV1_0001033 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B2R8F1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038840 PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.828e-28 Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291 ADKV SK V+ PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR F + SSL+ D+ + I S+KKALDF+FQD+E +LRLV++A EA+ Sbjct: 1548 ADKVTISKSVNSPQVAGNHVISARNRPNFVRLLNFAQDVNFAMEASRKSRNAFVAANSSLAVDKIADGISSIKKALDFSFQDVEELLRLVKVAAEAI 1644
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: K7KG93_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.053e-28 Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 Query: 1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291 ADKV SK V+ PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR F + SSL+ D+ + I S+KKALDF+FQD+E +LRLV++A EA+ Sbjct: 1573 ADKVTISKSVNSPQVAGNHVISARNRPNFVRLLNFAQDVNFAMEASRKSRNAFVAANSSLAVDKIADGISSIKKALDFSFQDVEELLRLVKVAAEAI 1669
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A067JVW2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13877 PE=4 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 8.035e-28 Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 4 DKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEA 288 DK +KG+S PQV +HVI+ARNRP F+R LNFAQDVN+AMEASRKSRI FA + SL ++ E I S+K ALDFNF D+EG+LRL+RLA+EA Sbjct: 1534 DKGFPAKGISSPQVTGSHVIAARNRPSFLRLLNFAQDVNFAMEASRKSRIAFAAANVSLGETQRREGISSIKTALDFNFHDVEGLLRLIRLAIEA 1628
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A022QPH7_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025894mg PE=4 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 2.128e-27 Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 Query: 1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291 +DK A +K V PQV+ NH+I++RNR F+R +NFAQDV++AMEASRKSRI + + L + IYS+KKALDFNFQD+EG+LRLVR+AMEA+ Sbjct: 675 SDKAALAKVVGSPQVSGNHIITSRNRSSFLRVINFAQDVSFAMEASRKSRIALTSATTRLGETSHKDGIYSLKKALDFNFQDVEGLLRLVRIAMEAI 771
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A022S1R0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000173mg PE=4 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.134e-27 Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 Query: 1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291 +DK A +K V PQV+ NH+I++RNR F+R +NFAQDV++AMEASRKSRI + + L + IYS+KKALDFNFQD+EG+LRLVR+AMEA+ Sbjct: 1399 SDKAALAKVVGSPQVSGNHIITSRNRSSFLRVINFAQDVSFAMEASRKSRIALTSATTRLGETSHKDGIYSLKKALDFNFQDVEGLLRLVRIAMEAI 1495 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0001033 ID=g.raimondii_cottongen_reftransV1_0001033; Name=g.raimondii_cottongen_reftransV1_0001033; organism=Gossypium raimondii; type=contig; length=1152bpback to top |