g.raimondii_cottongen_reftransV1_0001033, g.raimondii_cottongen_reftransV1_0001033 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0001033
Unique Nameg.raimondii_cottongen_reftransV1_0001033
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length1152
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr04chromosomeg.raimondii_cottongen_reftransV1_0001033:1..1152 .
Chr04:4871543..4875222 -
Homology
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A0B2R8F1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_038840 PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.828e-28
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            ADKV  SK V+ PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR  F  + SSL+ D+  + I S+KKALDF+FQD+E +LRLV++A EA+
Sbjct: 1548 ADKVTISKSVNSPQVAGNHVISARNRPNFVRLLNFAQDVNFAMEASRKSRNAFVAANSSLAVDKIADGISSIKKALDFSFQDVEELLRLVKVAAEAI 1644
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: K7KG93_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.053e-28
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            ADKV  SK V+ PQVA NHVISARNRP FVR LNFAQDVN+AMEASRKSR  F  + SSL+ D+  + I S+KKALDF+FQD+E +LRLV++A EA+
Sbjct: 1573 ADKVTISKSVNSPQVAGNHVISARNRPNFVRLLNFAQDVNFAMEASRKSRNAFVAANSSLAVDKIADGISSIKKALDFSFQDVEELLRLVKVAAEAI 1669
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A067JVW2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13877 PE=4 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.035e-28
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    4 DKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEA 288
            DK   +KG+S PQV  +HVI+ARNRP F+R LNFAQDVN+AMEASRKSRI FA +  SL   ++ E I S+K ALDFNF D+EG+LRL+RLA+EA
Sbjct: 1534 DKGFPAKGISSPQVTGSHVIAARNRPSFLRLLNFAQDVNFAMEASRKSRIAFAAANVSLGETQRREGISSIKTALDFNFHDVEGLLRLIRLAIEA 1628
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A022QPH7_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025894mg PE=4 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.128e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            +DK A +K V  PQV+ NH+I++RNR  F+R +NFAQDV++AMEASRKSRI    + + L      + IYS+KKALDFNFQD+EG+LRLVR+AMEA+
Sbjct:  675 SDKAALAKVVGSPQVSGNHIITSRNRSSFLRVINFAQDVSFAMEASRKSRIALTSATTRLGETSHKDGIYSLKKALDFNFQDVEGLLRLVRIAMEAI 771
[Close]
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Match: A0A022S1R0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a000173mg PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.134e-27
Identity = 57/97 (58.76%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 ADKVAFSKGVSPPQVAANHVISARNRPIFVRFLNFAQDVNYAMEASRKSRITFAHSKSSLSGDEKGEVIYSVKKALDFNFQDIEGMLRLVRLAMEAV 291
            +DK A +K V  PQV+ NH+I++RNR  F+R +NFAQDV++AMEASRKSRI    + + L      + IYS+KKALDFNFQD+EG+LRLVR+AMEA+
Sbjct: 1399 SDKAALAKVVGSPQVSGNHIITSRNRSSFLRVINFAQDVSFAMEASRKSRIALTSATTRLGETSHKDGIYSLKKALDFNFQDVEGLLRLVRIAMEAI 1495
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2R8F1_GLYSO1.828e-2867.01Uncharacterized protein OS=Glycine soja GN=glysoja... [more]
K7KG93_SOYBN2.053e-2867.01Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A067JVW2_JATCU8.035e-2864.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
A0A022QPH7_ERYGU2.128e-2758.76Uncharacterized protein (Fragment) OS=Erythranthe ... [more]
A0A022S1R0_ERYGU5.134e-2758.76Uncharacterized protein OS=Erythranthe guttata GN=... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0001033 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0001033 ID=g.raimondii_cottongen_reftransV1_0001033; Name=g.raimondii_cottongen_reftransV1_0001033; organism=Gossypium raimondii; type=contig; length=1152bp
GCAGACAAGGTTGCTTTTTCAAAAGGTGTTAGCCCTCCCCAGGTTGCTGC
AAATCATGTTATTTCTGCTCGAAACCGTCCTATCTTTGTGCGGTTCCTCA
ATTTTGCACAGGATGTAAATTATGCCATGGAAGCTTCGAGGAAATCACGA
ATTACTTTTGCACATTCTAAATCAAGTTTGTCAGGGGATGAAAAGGGTGA
GGTTATATATTCTGTGAAAAAGGCTCTTGATTTTAACTTCCAAGACATAG
AGGGGATGCTACGTTTGGTACGCCTTGCAATGGAAGCCGTTATCCACTAA
GAAAGAGAAAGTGGTTAATGAGCATGATTTATACTAGGAAGGAATTTTCC
TTTTTATGGTTTATCCTTGGTGACGAAGTCCTTGAGGAGAAAAGAAATGG
AATGGTCAGTTTCTGCTGCAATGCATAACAATTATATTTAGAAGCTGACC
AGTGCCTGCTTTCTAACACCCCTTTTACACGTAAACCACCATAGTACCTG
TCATGGTATGCACATATGATTAATCAAGATGAGTTGAAACAATATATGAA
AAAGATTGGTGCCAAATTCTATGGTAGAGGTCCAAATGAGTTTACCGGAA
TAAAATTTCTTTTTCTTTTTTCCCTCTAGAGTCAGATATTTATGTACCGT
AAACATGTCTTTCTAATGGTTCTAAAATTCAGAATGTGGCAAGTGCTGTT
GTTTGTGGGAGACATCATTCTATTATCTTCAAGTTGGCCATCTTGATGCT
GATAGGTTGAATAATATGGGCAGTTGCATTCATCGGGAAGCTGCCTATGG
ATCGATGGCTATGGTGCTCTGATTTTTCATTTTTATTAGAGTATCCATGT
CTGGCACGACACCTTTTATGTGATGCAACTTCAAATGAGCATGGAGATAT
GATCTTCCAAATAAAACCCAACGTACTGGTGTTGGCGTCCATGTTTTCCA
ACTTTTTCACCTAAAAATATATCGGTTGCTAGGCTCCATGTGACATTTAG
AGGACAAATTTTGGACTGACGTTTTTTAAAAAAATCTCATTACTAGGCAA
TGACTCTTATTTTAATCAAGTTTTTCTACAAAATTGGACCCAAATCTGAT
TGCTGTTATATATCATGTCCTTGTTCAATTGTGTTTTCCTCTTTTTTTAT
CT
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