g.raimondii_cottongen_reftransV1_0000491, g.raimondii_cottongen_reftransV1_0000491 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000491
Unique Nameg.raimondii_cottongen_reftransV1_0000491
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length643
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Chr06chromosomeg.raimondii_cottongen_reftransV1_0000491:1..643 .
Chr06:37671562..37672204 -
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A067L7I0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22730 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.102e-33
Identity = 85/175 (48.57%), Postives = 108/175 (61.71%), Query Frame = -3
Query:  162 NENFRKGAKHLLSEIHRRKT------HRNHHDQQQPQ--QLFLKPEDSHGW--MESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP--YQQKA---NTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNER 641
            NE FRKGAKHLLSEIHRRKT       ++ HD Q     Q+  + +++ GW  ++S    P   + DILTAL++DNQRLRRKNYML+SEL+HMKTLYNDIIYFIQNHVKP    Y+QK    N     I++L       G+     +   +S S  +   SN+KLFGV L   +R
Sbjct:  102 NEYFRKGAKHLLSEIHRRKTSQTHHQQQHFHDNQSSSLPQILQQDQENFGWNNLDSSFLCPPKPTNDILTALSEDNQRLRRKNYMLLSELSHMKTLYNDIIYFIQNHVKPTTPNYEQKITNYNATSPKIVEL------LGSVKNNNNNNKSSISSNLNEESNIKLFGVSLSGKKR 270          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: C6T532_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.136e-33
Identity = 72/130 (55.38%), Postives = 95/130 (73.08%), Query Frame = -3
Query:  273 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY--QQKANTVGSNIIQLGPSIHV 641
            NE FRKGAKHLL EIHRRKT     +++H   QP QL L+P+++  W+++P  PSP+   TDIL AL++DNQRLRRKN+ML+SELTHMK LYNDIIYFIQNHV P     +Q++ +    +++L  S +V
Sbjct:   98 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQL-LQPDENMCWIDAPPLPSPK-PGTDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPAASYDEQRSRSAILKMVELDSSPNV 225          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A059AAG2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00680 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.903e-30
Identity = 82/181 (45.30%), Postives = 99/181 (54.70%), Query Frame = -3
Query:  147 NENFRKGAKHLLSEIHRRKTHRNH-HDQQQPQQL--FLKPEDSHGWMESPSPSPRGSST-----DILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNI--IQLGPSIHVSGTETAETSVL------GNSSSLTVPNNSNVKLFGVPLIDNERFAPRK 641
            NE FRKGAKHLL EIHRRKT ++  HD   P  L  F +P D +    S  P            D+L  LT+DNQRLRRKN ML+SELTHMK+LYNDIIYFIQNHVKP+P+   AN    ++  I +   I +   +  +T            S       SN KLFGV L   +R  P K
Sbjct:  115 NEYFRKGAKHLLCEIHRRKTPQHQSHDHTPPPPLPHFFQPVDENLCWPSADPPFPPQPKPLPHGDVLAVLTEDNQRLRRKNLMLLSELTHMKSLYNDIIYFIQNHVKPLPH-DPANNHNDHLDSISVPKLIELDSDQEGDTCSRMARLKKAGRSGEEAGRGSNFKLFGVSLSGKKRLHPEK 294          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: R4VDR3_9CARY (Putative heat stress transcription factor B-4 (Fragment) OS=Stenocereus gummosus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.169e-28
Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = -3
Query:  159 PQQLFLKPEDSHGWME----SPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVG-SNIIQLGPS--IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERF 554
            PQ L   P+++  W+     SP PSP+   GS  DILTALT+DNQRLR++N+ML+SEL HMKTLYNDIIYFIQNHVKPVP    +  V  +N + + P   I +           GN+SS        +KLFGVPL   +R 
Sbjct:    4 PQYLHSTPDENGPWINNIDHSPLPSPKPAGGSPGDILTALTEDNQRLRKRNFMLLSELNHMKTLYNDIIYFIQNHVKPVPGNDLSRPVNYNNAMPIAPPKLIELDDQGQGHQGDSGNNSSRMKEQRETIKLFGVPLHSKKRL 145          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: M0SMM3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.487e-28
Identity = 73/163 (44.79%), Postives = 90/163 (55.21%), Query Frame = -3
Query:  159 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKP--VPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERF 641
            NE FR+G KHLLSEIHRRKT       Q PQ     P+  H W+E PS  P G   D L+AL++DNQRLR+KN +L+SELT MK LYNDIIYFIQ+HV P   P  + A      +++L P                     T   +S VKLFG P+   +R 
Sbjct:   93 NEYFRRGEKHLLSEIHRRKT------SQVPQFFHCHPQ--HAWIEPPSAVP-GGDVDFLSALSEDNQRLRKKNSLLLSELTRMKKLYNDIIYFIQHHVAPPVAPEPRHA-----RLVELPPCDQ------------NQPLPATAEPDSGVKLFGFPIHGKKRL 229          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.260e-26
Identity = 73/182 (40.11%), Postives = 95/182 (52.20%), Query Frame = -3
Query:  168 NENFRKGAKHLLSEIHRRKTHRNHHD---------QQQPQQLFLKPEDS------------HGWMESPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDN 641
            NE FRKGAKHLLSEIHRRK+               Q  P  LF  P               + + E    SP    G   D+L AL++DN++LRR+N +L+SEL HM+ LYNDIIYF+QNHV+PV     A      +++LGPS       T E      S S    +++ V+LFGV L D+
Sbjct:  109 NEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAPPPLAAATSCRLVELGPS-------TTERRRCAASPSGDNDDDAAVRLFGVRLDDD 283          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.207e-23
Identity = 79/220 (35.91%), Postives = 106/220 (48.18%), Query Frame = -3
Query:  135 NENFRKGAKHLLSEIHRRKTHR-----------NHHDQQQ-----------PQQLFLKPEDSHGWMESPSPS-PRGSSTDI-----LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLG----PSIHVSGTETAETSVLG--------NSSSLTV-----------PNNSNVKLFGVPLIDNERFAPRKH*YS 641
            NE F++G KHLL EIHRRKT +           +HH   Q           P      PE+ H W +   PS PR     I     +TAL++DN+RLRR N +L+SEL HMK LYNDIIYF+QNHVKPV     ++ + S + +      P++    T T   + L         + SS+TV            N    KLFGV L  +++   R H +S
Sbjct:  107 NEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPTLDYYNTATVNATNLNALNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFGVSLPSSKK---RSHHFS 323          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-17
Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = -3
Query:  351 NENFRKGAKHLLSEIHRRKTHRNHHDQQQ-----------PQQLF----------LKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNH 641
            NE FRKGAKHLL+EIHRRK+ +                  P  L           L  E+             G   D L AL++DN++LRR+N +L+SEL HMK LYNDIIYF+QNH
Sbjct:  107 NEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNH 224          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.653e-12
Identity = 52/152 (34.21%), Postives = 65/152 (42.76%), Query Frame = -3
Query:  345 NENFRKGAKHLLSEIHRRKTHRN-------------------HHDQQQPQQ---LFLKPED---SHG---------WME-------------SPSPSPRGSSTDILT------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641
            NE FRKG K LL+EIHRRKT                      HH      Q    F+  +    +HG         W E              P+PSP  +             L ++N+RLRR N  L+ EL HM+ LYNDIIYF+QNHV+
Sbjct:   98 NEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.033e-11
Identity = 50/145 (34.48%), Postives = 62/145 (42.76%), Query Frame = -3
Query:  345 NENFRKGAKHLLSEIHRRKT------------HRNHHDQQQPQQLFLKPEDS--HG-------------WMESPSPSPRGSSTDILT-------------------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641
            NE FRKG K LL EIHRRK+                  +      F +  D   HG             W ES +  P   S+ +L+                   AL Q+N RL R N  LV EL HM+ LY+DIIYF+QNHV+
Sbjct:  103 NEFFRKGEKQLLCEIHRRKSAAATWPPFPPPPPPFFAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAA-LPVAPSSRLLSQLGPVIAPARRAAATPEEEALMQENHRLLRGNAALVQELAHMRKLYSDIIYFVQNHVR 246          
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.732e-7
Identity = 36/126 (28.57%), Postives = 51/126 (40.48%), Query Frame = -3
Query:  336 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDI------------------------LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP 641
            NENF++G K LL+ I RRKT  +             P          S SP  S  DI                         T L+ +N++L++ N ML SEL   K   N+++ F+  +VK  P
Sbjct:   82 NENFKRGQKELLTAIRRRKTVTST------------PAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAP 195          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A067L7I0_JATCU3.102e-3348.57Uncharacterized protein OS=Jatropha curcas GN=JCGZ... [more]
C6T532_SOYBN5.136e-3355.38Putative uncharacterized protein (Fragment) OS=Gly... [more]
A0A059AAG2_EUCGR9.903e-3045.30Uncharacterized protein OS=Eucalyptus grandis GN=E... [more]
R4VDR3_9CARY2.169e-2847.89Putative heat stress transcription factor B-4 (Fra... [more]
M0SMM3_MUSAM3.487e-2844.79Uncharacterized protein OS=Musa acuminata subsp. m... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HFB4D_ORYSJ1.260e-2640.11Heat stress transcription factor B-4d OS=Oryza sat... [more]
HSFB4_ARATH1.207e-2335.91Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HFB4B_ORYSJ1.037e-1742.37Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4C_ORYSJ6.653e-1234.21Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB4A_ORYSJ1.033e-1134.48Putative heat stress transcription factor B-4a OS=... [more]
HSF24_SOLPE4.732e-728.57Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10015:SF177SUBFAMILY NOT NAMEDcoord: 1..107
IPR027725Heat shock transcription factor familyPANTHERPTHR10015HEAT SHOCK TRANSCRIPTION FACTORcoord: 1..107

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000491 ID=g.raimondii_cottongen_reftransV1_0000491; Name=g.raimondii_cottongen_reftransV1_0000491; organism=Gossypium raimondii; type=contig; length=643bp
TTGTACTGCAAATTAGATCAACTATCAAATTCTAGGTAAGCTAAGCTAAG
GAAGATTAATGATGATTATCAAATATGTCTAAATCAACCAAAAAAGCTAA
TCAGTGGAGGCACAGCCAGCATTTCAATTCTCGCCGAATATTAATGTTTT
CGGGGCGCAAACCGTTCGTTGTCAATGAGAGGGACTCCGAAAAGCTTCAC
ATTACTGTTATTTGGCACAGTCAGTGATGATGAGTTGCCCAAAACGCTGG
TTTCAGCAGTTTCAGTGCCAGAAACATGGATTGAAGGACCCAATTGTATG
ATGTTGGATCCTACTGTATTGGCCTTTTGTTGATAAGGCACTGGTTTCAC
ATGATTTTGGATGAAATAAATAATGTCATTGTAAAGGGTCTTCATGTGAG
TGAGTTCAGATACTAGCATGTAGTTCTTTCTTCGTAGTCTCTGATTATCT
TGGGTAAGTGCTGTTAGAATGTCGGTACTGCTGCCTCTCGGAGATGGCGA
TGGAGACTCCATCCAACCATGGCTGTCTTCTGGTTTCAGAAACAACTGTT
GAGGTTGTTGCTGGTCGTGGTGGTTTCGATGGGTTTTTCTTCGATGGATC
TCTGACAGCAAGTGCTTAGCTCCTTTCCTGAAATTCTCATTTG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam