g.raimondii_cottongen_reftransV1_0000491, g.raimondii_cottongen_reftransV1_0000491 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A067L7I0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22730 PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 3.102e-33 Identity = 85/175 (48.57%), Postives = 108/175 (61.71%), Query Frame = -3 Query: 162 NENFRKGAKHLLSEIHRRKT------HRNHHDQQQPQ--QLFLKPEDSHGW--MESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP--YQQKA---NTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNER 641 NE FRKGAKHLLSEIHRRKT ++ HD Q Q+ + +++ GW ++S P + DILTAL++DNQRLRRKNYML+SEL+HMKTLYNDIIYFIQNHVKP Y+QK N I++L G+ + +S S + SN+KLFGV L +R Sbjct: 102 NEYFRKGAKHLLSEIHRRKTSQTHHQQQHFHDNQSSSLPQILQQDQENFGWNNLDSSFLCPPKPTNDILTALSEDNQRLRRKNYMLLSELSHMKTLYNDIIYFIQNHVKPTTPNYEQKITNYNATSPKIVEL------LGSVKNNNNNNKSSISSNLNEESNIKLFGVSLSGKKR 270
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: C6T532_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.136e-33 Identity = 72/130 (55.38%), Postives = 95/130 (73.08%), Query Frame = -3 Query: 273 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY--QQKANTVGSNIIQLGPSIHV 641 NE FRKGAKHLL EIHRRKT +++H QP QL L+P+++ W+++P PSP+ TDIL AL++DNQRLRRKN+ML+SELTHMK LYNDIIYFIQNHV P +Q++ + +++L S +V Sbjct: 98 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQL-LQPDENMCWIDAPPLPSPK-PGTDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPAASYDEQRSRSAILKMVELDSSPNV 225
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A059AAG2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00680 PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 9.903e-30 Identity = 82/181 (45.30%), Postives = 99/181 (54.70%), Query Frame = -3 Query: 147 NENFRKGAKHLLSEIHRRKTHRNH-HDQQQPQQL--FLKPEDSHGWMESPSPSPRGSST-----DILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNI--IQLGPSIHVSGTETAETSVL------GNSSSLTVPNNSNVKLFGVPLIDNERFAPRK 641 NE FRKGAKHLL EIHRRKT ++ HD P L F +P D + S P D+L LT+DNQRLRRKN ML+SELTHMK+LYNDIIYFIQNHVKP+P+ AN ++ I + I + + +T S SN KLFGV L +R P K Sbjct: 115 NEYFRKGAKHLLCEIHRRKTPQHQSHDHTPPPPLPHFFQPVDENLCWPSADPPFPPQPKPLPHGDVLAVLTEDNQRLRRKNLMLLSELTHMKSLYNDIIYFIQNHVKPLPH-DPANNHNDHLDSISVPKLIELDSDQEGDTCSRMARLKKAGRSGEEAGRGSNFKLFGVSLSGKKRLHPEK 294
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: R4VDR3_9CARY (Putative heat stress transcription factor B-4 (Fragment) OS=Stenocereus gummosus PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.169e-28 Identity = 68/142 (47.89%), Postives = 86/142 (60.56%), Query Frame = -3 Query: 159 PQQLFLKPEDSHGWME----SPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVG-SNIIQLGPS--IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERF 554 PQ L P+++ W+ SP PSP+ GS DILTALT+DNQRLR++N+ML+SEL HMKTLYNDIIYFIQNHVKPVP + V +N + + P I + GN+SS +KLFGVPL +R Sbjct: 4 PQYLHSTPDENGPWINNIDHSPLPSPKPAGGSPGDILTALTEDNQRLRKRNFMLLSELNHMKTLYNDIIYFIQNHVKPVPGNDLSRPVNYNNAMPIAPPKLIELDDQGQGHQGDSGNNSSRMKEQRETIKLFGVPLHSKKRL 145
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: M0SMM3_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.487e-28 Identity = 73/163 (44.79%), Postives = 90/163 (55.21%), Query Frame = -3 Query: 159 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKP--VPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERF 641 NE FR+G KHLLSEIHRRKT Q PQ P+ H W+E PS P G D L+AL++DNQRLR+KN +L+SELT MK LYNDIIYFIQ+HV P P + A +++L P T +S VKLFG P+ +R Sbjct: 93 NEYFRRGEKHLLSEIHRRKT------SQVPQFFHCHPQ--HAWIEPPSAVP-GGDVDFLSALSEDNQRLRKKNSLLLSELTRMKKLYNDIIYFIQHHVAPPVAPEPRHA-----RLVELPPCDQ------------NQPLPATAEPDSGVKLFGFPIHGKKRL 229
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.260e-26 Identity = 73/182 (40.11%), Postives = 95/182 (52.20%), Query Frame = -3 Query: 168 NENFRKGAKHLLSEIHRRKTHRNHHD---------QQQPQQLFLKPEDS------------HGWMESPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDN 641 NE FRKGAKHLLSEIHRRK+ Q P LF P + + E SP G D+L AL++DN++LRR+N +L+SEL HM+ LYNDIIYF+QNHV+PV A +++LGPS T E S S +++ V+LFGV L D+ Sbjct: 109 NEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAPPPLAAATSCRLVELGPS-------TTERRRCAASPSGDNDDDAAVRLFGVRLDDD 283
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.207e-23 Identity = 79/220 (35.91%), Postives = 106/220 (48.18%), Query Frame = -3 Query: 135 NENFRKGAKHLLSEIHRRKTHR-----------NHHDQQQ-----------PQQLFLKPEDSHGWMESPSPS-PRGSSTDI-----LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLG----PSIHVSGTETAETSVLG--------NSSSLTV-----------PNNSNVKLFGVPLIDNERFAPRKH*YS 641 NE F++G KHLL EIHRRKT + +HH Q P PE+ H W + PS PR I +TAL++DN+RLRR N +L+SEL HMK LYNDIIYF+QNHVKPV ++ + S + + P++ T T + L + SS+TV N KLFGV L +++ R H +S Sbjct: 107 NEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPTLDYYNTATVNATNLNALNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFGVSLPSSKK---RSHHFS 323
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-17 Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = -3 Query: 351 NENFRKGAKHLLSEIHRRKTHRNHHDQQQ-----------PQQLF----------LKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNH 641 NE FRKGAKHLL+EIHRRK+ + P L L E+ G D L AL++DN++LRR+N +L+SEL HMK LYNDIIYF+QNH Sbjct: 107 NEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNH 224
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.653e-12 Identity = 52/152 (34.21%), Postives = 65/152 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKTHRN-------------------HHDQQQPQQ---LFLKPED---SHG---------WME-------------SPSPSPRGSSTDILT------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL+EIHRRKT HH Q F+ + +HG W E P+PSP + L ++N+RLRR N L+ EL HM+ LYNDIIYF+QNHV+ Sbjct: 98 NEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.033e-11 Identity = 50/145 (34.48%), Postives = 62/145 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKT------------HRNHHDQQQPQQLFLKPEDS--HG-------------WMESPSPSPRGSSTDILT-------------------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL EIHRRK+ + F + D HG W ES + P S+ +L+ AL Q+N RL R N LV EL HM+ LY+DIIYF+QNHV+ Sbjct: 103 NEFFRKGEKQLLCEIHRRKSAAATWPPFPPPPPPFFAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAA-LPVAPSSRLLSQLGPVIAPARRAAATPEEEALMQENHRLLRGNAALVQELAHMRKLYSDIIYFVQNHVR 246
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.732e-7 Identity = 36/126 (28.57%), Postives = 51/126 (40.48%), Query Frame = -3 Query: 336 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDI------------------------LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP 641 NENF++G K LL+ I RRKT + P S SP S DI T L+ +N++L++ N ML SEL K N+++ F+ +VK P Sbjct: 82 NENFKRGQKELLTAIRRRKTVTST------------PAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAP 195 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000491 ID=g.raimondii_cottongen_reftransV1_0000491; Name=g.raimondii_cottongen_reftransV1_0000491; organism=Gossypium raimondii; type=contig; length=643bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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