g.raimondii_cottongen_reftransV1_0000491, g.raimondii_cottongen_reftransV1_0000491 (contig) Gossypium raimondii
Overview
Alignments
The following features are aligned
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0B2R7S0_GLYSO (Heat stress transcription factor B-4 OS=Glycine soja GN=glysoja_024012 PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.316e-42 Identity = 89/173 (51.45%), Postives = 123/173 (71.10%), Query Frame = -3 Query: 150 NENFRKGAKHLLSEIHRRKTHRNHHD---QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTE-----TAETSVLGNS-SSLTVPNNSNVKLFGVPLIDNERFAPR 641 NE FRKGAKHLL EIHRRK + HH Q P Q+ L+ ++S W+++P PS + +TDILTAL++DNQ LRRKN+ML+SEL+HMK+LYNDIIYFIQNHVK P++Q++++V +++L S+H S + TA++ V+ S + T +NS+VKLFGV L + APR Sbjct: 87 NEYFRKGAKHLLCEIHRRKAPQQHHQLFHDQLPSQI-LQKDESLCWLDTPLPSSK-PNTDILTALSEDNQTLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKSPPFEQRSSSVIPKLVELD-SLHESPNDMGVLRTAKSCVVDKSLVTSTEESNSSVKLFGVTL-SGRKIAPR 255
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: V7B9G3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G202500g PE=3 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 1.828e-42 Identity = 86/174 (49.43%), Postives = 118/174 (67.82%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPS------IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAP 641 NE FRKG+KHLL EIHRRKT +++H QP QL L+P+++ W+++P PSP G+ DIL AL++DNQRLRRKN+ML+SELTHMK LYNDIIYFIQNH+ P Y+Q++++ +++L S I + + E S++ +S NS+VKLFGVPL +R P Sbjct: 98 NEYFRKGSKHLLCEIHRRKTPHLYQQHYHMHDQPSQL-LQPDENLCWIDTPPLPSPPGN--DILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHISPASYEQRSSSAILKLVELESSPQAPNFIRPAKSHIMEKSLVSSSDE----PNSSVKLFGVPLCGKKRLHP 264
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: I1JIV9_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 2.863e-42 Identity = 91/173 (52.60%), Postives = 119/173 (68.79%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY--QQKANTVGSNIIQLGPS---IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRKT +++H QP QL L+P+++ W+++P PSP+ TDIL AL++DNQRLRRKN+ML+SELTHMK LYNDIIYFIQNHV P +Q++ + +++L S I + + E S++ NSS PNNS+VKLFGVPL +R P Sbjct: 98 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQL-LQPDENMCWIDAPPLPSPK-PGTDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPAASYDEQRSRSAILKMVELDSSPNVIRPTKSRIMEKSLVTNSSD--EPNNSSVKLFGVPLCGKKRLHP 266
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0B2S2N2_GLYSO (Heat stress transcription factor B-4 OS=Glycine soja GN=glysoja_004062 PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 3.375e-42 Identity = 91/173 (52.60%), Postives = 119/173 (68.79%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY--QQKANTVGSNIIQLGPS---IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRKT +++H QP QL L+P+++ W+++P PSP+ TDIL AL++DNQRLRRKN+ML+SELTHMK LYNDIIYFIQNHV P +Q++ + +++L S I + + E S++ NSS PNNS+VKLFGVPL +R P Sbjct: 87 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQL-LQPDENMCWIDAPPLPSPK-PGTDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPAASYDEQRSRSAILKMVELDSSPNVIRPTKSRIMEKSLVTNSSD--EPNNSSVKLFGVPLCGKKRLHP 255
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: D7T193_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g02730 PE=3 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.073e-42 Identity = 98/181 (54.14%), Postives = 119/181 (65.75%), Query Frame = -3 Query: 147 NENFRKGAKHLLSEIHRRKTHRNHHDQQQ----PQQLFLKPE-DSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPV-PYQQKANT-VGSNIIQLGPSIH---VSGTETAETSV-LGNSSSLTV-----PNNSNVKLFGVPLIDNERFAPRK 641 NE FRKG KH+LSEIHRRKT +HH P Q FL+PE ++ W++SP PSP SS D+LTALTQDN RLRRKN+ML+SEL HMKTLYNDII+FIQNHVKPV PY Q+ + +I+L S+ VSG +T + GN S T+ NN + KLFGVPL +R P K Sbjct: 97 NEYFRKGGKHMLSEIHRRKTPHHHHQPYHDHHQPPQ-FLQPELENSVWIDSPLPSPTASS-DVLTALTQDNHRLRRKNFMLLSELAHMKTLYNDIIFFIQNHVKPVAPYDQRPKSNAAPKLIELDSSLQSPNVSGMQTPKHRYSAGNCSMSTLTDDQQTNNGSFKLFGVPLSGKKRLHPEK 275
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: V7BJF7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G015700g PE=3 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 4.186e-42 Identity = 85/169 (50.30%), Postives = 118/169 (69.82%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKTHRNHHD--QQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQ---LGPSIHVSGTETAETSVLGNS-SSLTVPNNSNVKLFGVPLIDNERFAP 641 NE F+KGAKHLL EIHRRKT + HH QP L+ ++S W+++P SP+ SSTDILTAL++DNQRLRRKN+ML+SEL+HMK+LYNDIIYFIQNHVK P++Q+ ++ +++ L I+ T+++S + S + T ++S+VKLFGV L +R P Sbjct: 98 NEYFKKGAKHLLCEIHRRKTPQLHHQLYHDQPPSQILQQDESLCWLDTPLSSPK-SSTDILTALSEDNQRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKAPPFEQRTSSAIQKLVEFDSLNEPINNISLRTSKSSFVDKSFFTSTEESDSSVKLFGVLLSGRKRLHP 265
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: I1M761_SOYBN (Uncharacterized protein OS=Glycine max PE=3 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 7.993e-40 Identity = 92/172 (53.49%), Postives = 116/172 (67.44%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY-QQKANTVGSNIIQLGPS---IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRKT +++H QP L L+PE++ W+++P PSP+ TDILTAL++DNQRLRRKN ML+SELTHMK LYNDIIYFIQNHV P Y +Q++ + +++L S I + + E S LG SS NS+VKLFGVPL +R P Sbjct: 98 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPHL-LQPEENMCWIDTPPLPSPK-PGTDILTALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHVSPASYDEQRSRSAILKLLELDSSPNVIRPAKSRITEKS-LGTSSDEP---NSSVKLFGVPLCGKKRLHP 263
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: G7KCV7_MEDTR (Heat shock transcription factor OS=Medicago truncatula GN=MTR_5g089170 PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 9.132e-40 Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT-HRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPV-PYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNN-----SNVKLFGVPLIDNERFAP 641 N+ F+KGAKHLL EIHRRKT + +P++S W++SP PSP+ S+TDILTAL++DNQRLRRKN+ML+SEL+HMK LYNDIIYFIQNHV P P++Q++N + I++L V +SSS +PN+ S+VKLFGVPL +R P Sbjct: 98 NDYFKKGAKHLLCEIHRRKTPQHYQQQYYEQSPQIFQPDESICWIDSPLPSPK-SNTDILTALSEDNQRLRRKNFMLLSELSHMKNLYNDIIYFIQNHVSPASPFEQRSNN-SATILKL---------------VELDSSSPQLPNDKDCNSSSVKLFGVPLCGKKRVHP 250
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: A0A0B2PWG4_GLYSO (Heat stress transcription factor B-4 OS=Glycine soja GN=glysoja_020012 PE=3 SV=1) HSP 1 Score: 145.976 bits (367), Expect = 3.958e-39 Identity = 91/172 (52.91%), Postives = 115/172 (66.86%), Query Frame = -3 Query: 153 NENFRKGAKHLLSEIHRRKT----HRNHHDQQQPQQLFLKPEDSHGWMESPS-PSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPY-QQKANTVGSNIIQLGPS---IHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDNERFAP 641 NE FRKGAKHLL EIHRRKT +++H QP L L+PE++ W+++P PSP+ DILTAL++DNQRLRRKN ML+SELTHMK LYNDIIYFIQNHV P Y +Q++ + +++L S I + + E S LG SS NS+VKLFGVPL +R P Sbjct: 83 NEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPHL-LQPEENMCWIDTPPLPSPK-PGIDILTALSEDNQRLRRKNLMLLSELTHMKNLYNDIIYFIQNHVSPASYDEQRSRSAILKLLELDSSPNVIRPAKSRITEKS-LGTSSDEP---NSSVKLFGVPLCGKKRLHP 248
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Match: W9QRV6_9ROSA (Heat stress transcription factor B-4 OS=Morus notabilis GN=L484_013542 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.022e-35 Identity = 91/208 (43.75%), Postives = 113/208 (54.33%), Query Frame = -3 Query: 147 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQL-------------FLKPED--------SHGW-------MESPSPSPRGSSTD---ILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPV------PYQQKANTVGSNIIQLGPSIHVSGTETAETSVL------GNSSSLTVPNNSNVKLFGVPLIDNERFAPRK 641 NE FRKGAKHLLSEIHRRKT + H QQPQ F + D + GW S +PSP+ ++D ILT+LT+DNQRLRRKN++L+SELTHMK+LYNDIIYFIQNHVKPV P ++ ++ LG S V +T + GNS ++ N VKLFGV L +R P K Sbjct: 87 NEYFRKGAKHLLSEIHRRKTSQQH---QQPQNYHHHHHDHLLMNSHFFQALDHDHHKTSTNFGWNNINILETSSLAPSPKTCTSDDHNILTSLTEDNQRLRRKNFLLLSELTHMKSLYNDIIYFIQNHVKPVMPSTLSPISTVNSSSIPKLVGLGSSSPVPAVSEVKTMAISEICGSGNSREISEEKNGGVKLFGVSLSGRKRLHPEK 291
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 1.260e-26 Identity = 73/182 (40.11%), Postives = 95/182 (52.20%), Query Frame = -3 Query: 168 NENFRKGAKHLLSEIHRRKTHRNHHD---------QQQPQQLFLKPEDS------------HGWMESPSPSPR---GSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLGPSIHVSGTETAETSVLGNSSSLTVPNNSNVKLFGVPLIDN 641 NE FRKGAKHLLSEIHRRK+ Q P LF P + + E SP G D+L AL++DN++LRR+N +L+SEL HM+ LYNDIIYF+QNHV+PV A +++LGPS T E S S +++ V+LFGV L D+ Sbjct: 109 NEFFRKGAKHLLSEIHRRKSSSCSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDLLAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAPPPLAAATSCRLVELGPS-------TTERRRCAASPSGDNDDDAAVRLFGVRLDDD 283
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.207e-23 Identity = 79/220 (35.91%), Postives = 106/220 (48.18%), Query Frame = -3 Query: 135 NENFRKGAKHLLSEIHRRKTHR-----------NHHDQQQ-----------PQQLFLKPEDSHGWMESPSPS-PRGSSTDI-----LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVPYQQKANTVGSNIIQLG----PSIHVSGTETAETSVLG--------NSSSLTV-----------PNNSNVKLFGVPLIDNERFAPRKH*YS 641 NE F++G KHLL EIHRRKT + +HH Q P PE+ H W + PS PR I +TAL++DN+RLRR N +L+SEL HMK LYNDIIYF+QNHVKPV ++ + S + + P++ T T + L + SS+TV N KLFGV L +++ R H +S Sbjct: 107 NEFFKRGEKHLLCEIHRRKTSQMIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQIDTAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAPSNNSSYLSSFLQKQQQQQPPTLDYYNTATVNATNLNALNSSPPTSQSSITVLEDDHTNHHDQSNMRKTKLFGVSLPSSKK---RSHHFS 323
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-17 Identity = 50/118 (42.37%), Postives = 62/118 (52.54%), Query Frame = -3 Query: 351 NENFRKGAKHLLSEIHRRKTHRNHHDQQQ-----------PQQLF----------LKPEDSHGWMESPSPSPRGSSTDILTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNH 641 NE FRKGAKHLL+EIHRRK+ + P L L E+ G D L AL++DN++LRR+N +L+SEL HMK LYNDIIYF+QNH Sbjct: 107 NEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCTVAGDGGEGGDFLAALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNH 224
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 6.653e-12 Identity = 52/152 (34.21%), Postives = 65/152 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKTHRN-------------------HHDQQQPQQ---LFLKPED---SHG---------WME-------------SPSPSPRGSSTDILT------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL+EIHRRKT HH Q F+ + +HG W E P+PSP + L ++N+RLRR N L+ EL HM+ LYNDIIYF+QNHV+ Sbjct: 98 NEFFRKGEKQLLTEIHRRKTSSASTASPSPPPFFAPPHFPLFHHPGVAAAQHHHAFVGDDGVVAAHGIGMPFPQPHWREPNLPVATRLLALGGPAPSPSSAEAGGAGRAATAAVLMEENERLRRSNTALLQELAHMRKLYNDIIYFVQNHVR 249
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.033e-11 Identity = 50/145 (34.48%), Postives = 62/145 (42.76%), Query Frame = -3 Query: 345 NENFRKGAKHLLSEIHRRKT------------HRNHHDQQQPQQLFLKPEDS--HG-------------WMESPSPSPRGSSTDILT-------------------ALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVK 641 NE FRKG K LL EIHRRK+ + F + D HG W ES + P S+ +L+ AL Q+N RL R N LV EL HM+ LY+DIIYF+QNHV+ Sbjct: 103 NEFFRKGEKQLLCEIHRRKSAAATWPPFPPPPPPFFAPRHFAAGAFFRHGDGMLHGRLGALVTTTERRHWFESAA-LPVAPSSRLLSQLGPVIAPARRAAATPEEEALMQENHRLLRGNAALVQELAHMRKLYSDIIYFVQNHVR 246
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 4.732e-7 Identity = 36/126 (28.57%), Postives = 51/126 (40.48%), Query Frame = -3 Query: 336 NENFRKGAKHLLSEIHRRKTHRNHHDQQQPQQLFLKPEDSHGWMESPSPSPRGSSTDI------------------------LTALTQDNQRLRRKNYMLVSELTHMKTLYNDIIYFIQNHVKPVP 641 NENF++G K LL+ I RRKT + P S SP S DI T L+ +N++L++ N ML SEL K N+++ F+ +VK P Sbjct: 82 NENFKRGQKELLTAIRRRKTVTST------------PAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEKLKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAP 195 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pagesback to top
BLAST of g.raimondii_cottongen_reftransV1_0000491 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 6
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000491 ID=g.raimondii_cottongen_reftransV1_0000491; Name=g.raimondii_cottongen_reftransV1_0000491; organism=Gossypium raimondii; type=contig; length=643bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|