g.raimondii_cottongen_reftransV1_0000146, g.raimondii_cottongen_reftransV1_0000146 (contig) Gossypium raimondii
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0NVA1_GOSAR (E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.877e-13 Identity = 60/182 (32.97%), Postives = 85/182 (46.70%), Query Frame = 3 Query: 12 KAEELTKEKRKAESEARDARKRPMGKSFQSQFKKSREIHSRSHASVGFSNRNRGNQCSGYKA*TTFIASV----DNRPNKSGCPHYGRCHPGKCQMNDRACFKCGFQDHFIKDCFEMTKKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVIT 545 KAEEL EK++A+ EA+ + KR G++ KK R RS VG+S+R R ++ K+ + + SV D +P C Y + H + +M ACF+CG +HF++ C E KE D + +ARA R YAIRA E S+PDVIT Sbjct: 155 KAEELKNEKKQAKREAQVSSKRSSGRAHSFPTKKLRSHQERSTLLVGYSDRARSSKRHNSKSSSPVVTSVGSVNDQKPK---CKSYNKFHFREFRMKSGACFRCGSPEHFLRGCPERANKE-------------------------------DAIVKSNARALARTYAIRAREGVSAPDVIT 302
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MUC8_GOSAR (Triosephosphate isomerase OS=Gossypium arboreum GN=F383_26753 PE=4 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.526e-13 Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSF 754 E RP+ KEQD GLNRI V SI KLA+ DVG ITLS GHLGIVSL+ILS ACIG F Sbjct: 2 EFRPRLGKEQDFGLNRIYCPYFVPSIAKLAQGWKDVGGSITLSTGHLGIVSLSILSMACIGLGLF 66
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0NZP9_GOSAR (Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_24225 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.387e-12 Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3 Query: 354 KKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVITDQEKRSPDL 572 K+EK Q R S+ RGRP KN +G SSK VT+D R +AP+R YAI A E+A SPDVIT + KR+ ++ Sbjct: 2 KEEKKQDVRASSAPLRGRPQKNPESGASSKGVTRDAMARSKGKAPMRTYAIYAREEAESPDVITGEHKRAKEI 74
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P4R8_GOSAR (Phosphoribosylamine--glycine ligase OS=Gossypium arboreum GN=F383_24604 PE=4 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.245e-12 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3 Query: 378 RLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVIT 545 RLSNT RGRP +N+GN + + VT+D A R+D RAPV AYAI A ++ SSPDVIT Sbjct: 83 RLSNTVARGRPSRNMGNVSGGRGVTRDTAARYDVRAPVGAYAILARKEVSSPDVIT 138
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0ML00_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22700 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.714e-12 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -2 Query: 631 QKDQVPIHAVLKMLRLTIPKCPIDSVIKSPTSIDLRASLVIL 756 QKDQVPIHA+LKMLRLTIPKCPIDSVI+ TS D R SLVIL Sbjct: 5 QKDQVPIHAILKMLRLTIPKCPIDSVIEPLTSFDPRTSLVIL 46 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
Pages
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000146 ID=g.raimondii_cottongen_reftransV1_0000146; Name=g.raimondii_cottongen_reftransV1_0000146; organism=Gossypium raimondii; type=contig; length=784bpback to top Annotated Terms
The
following terms have been associated with
this contig:
|