g.raimondii_cottongen_reftransV1_0000146, g.raimondii_cottongen_reftransV1_0000146 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000146
Unique Nameg.raimondii_cottongen_reftransV1_0000146
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length784
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0NVA1_GOSAR (E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.877e-13
Identity = 60/182 (32.97%), Postives = 85/182 (46.70%), Query Frame = 3
Query:   12 KAEELTKEKRKAESEARDARKRPMGKSFQSQFKKSREIHSRSHASVGFSNRNRGNQCSGYKA*TTFIASV----DNRPNKSGCPHYGRCHPGKCQMNDRACFKCGFQDHFIKDCFEMTKKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVIT 545
            KAEEL  EK++A+ EA+ + KR  G++     KK R    RS   VG+S+R R ++    K+ +  + SV    D +P    C  Y + H  + +M   ACF+CG  +HF++ C E   KE                               D   + +ARA  R YAIRA E  S+PDVIT
Sbjct:  155 KAEELKNEKKQAKREAQVSSKRSSGRAHSFPTKKLRSHQERSTLLVGYSDRARSSKRHNSKSSSPVVTSVGSVNDQKPK---CKSYNKFHFREFRMKSGACFRCGSPEHFLRGCPERANKE-------------------------------DAIVKSNARALARTYAIRAREGVSAPDVIT 302          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MUC8_GOSAR (Triosephosphate isomerase OS=Gossypium arboreum GN=F383_26753 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.526e-13
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSF 754
            E RP+  KEQD GLNRI     V SI KLA+   DVG  ITLS GHLGIVSL+ILS ACIG   F
Sbjct:    2 EFRPRLGKEQDFGLNRIYCPYFVPSIAKLAQGWKDVGGSITLSTGHLGIVSLSILSMACIGLGLF 66          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0NZP9_GOSAR (Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum GN=F383_24225 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.387e-12
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  354 KKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVITDQEKRSPDL 572
            K+EK Q  R S+   RGRP KN  +G SSK VT+D   R   +AP+R YAI A E+A SPDVIT + KR+ ++
Sbjct:    2 KEEKKQDVRASSAPLRGRPQKNPESGASSKGVTRDAMARSKGKAPMRTYAIYAREEAESPDVITGEHKRAKEI 74          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P4R8_GOSAR (Phosphoribosylamine--glycine ligase OS=Gossypium arboreum GN=F383_24604 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.245e-12
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 3
Query:  378 RLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVIT 545
            RLSNT  RGRP +N+GN +  + VT+D A R+D RAPV AYAI A ++ SSPDVIT
Sbjct:   83 RLSNTVARGRPSRNMGNVSGGRGVTRDTAARYDVRAPVGAYAILARKEVSSPDVIT 138          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0ML00_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_22700 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.714e-12
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = -2
Query:  631 QKDQVPIHAVLKMLRLTIPKCPIDSVIKSPTSIDLRASLVIL 756
            QKDQVPIHA+LKMLRLTIPKCPIDSVI+  TS D R SLVIL
Sbjct:    5 QKDQVPIHAILKMLRLTIPKCPIDSVIEPLTSFDPRTSLVIL 46          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0NVA1_GOSAR1.877e-1332.97E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arb... [more]
A0A0B0MUC8_GOSAR3.526e-1363.08Triosephosphate isomerase OS=Gossypium arboreum GN... [more]
A0A0B0NZP9_GOSAR1.387e-1250.68Superoxide dismutase [Cu-Zn] OS=Gossypium arboreum... [more]
A0A0B0P4R8_GOSAR4.245e-1260.71Phosphoribosylamine--glycine ligase OS=Gossypium a... [more]
A0A0B0ML00_GOSAR4.714e-1283.33Uncharacterized protein OS=Gossypium arboreum GN=F... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 4..21
e-value: 5.0E-4
score: 19.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 6..19
score: 8.532

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000146 ID=g.raimondii_cottongen_reftransV1_0000146; Name=g.raimondii_cottongen_reftransV1_0000146; organism=Gossypium raimondii; type=contig; length=784bp
TCAAGGTTTGTAAAGCAGAGGAACTGACTAAGGAAAAGAGAAAAGCCGAG
TCTGAGGCTAGAGATGCAAGAAAGAGGCCGATGGGTAAGTCGTTCCAATC
TCAGTTTAAAAAATCTAGAGAGATACATTCCCGTTCTCATGCTTCAGTTG
GGTTTTCAAATAGAAACCGTGGAAATCAGTGTTCGGGTTATAAAGCTTAG
ACTACTTTTATTGCGAGCGTTGATAATCGACCCAATAAATCTGGATGCCC
ACATTATGGTAGATGTCACCCCGGCAAGTGCCAAATGAATGACCGAGCTT
GTTTCAAGTGTGGTTTCCAAGACCATTTCATTAAAGATTGCTTTGAGATG
ACTAAAAAAGAAAAGTTTCAGAGTACAAGGCTAAGTAATACTTCTTATAG
AGGGAGACCCCCGAAAAATATCGGGAATGGAACTAGTAGCAAAAATGTGA
CAAAGGATTTAGCAGGGAGATTCGACGCTAGAGCACCGGTTAGAGCTTAT
GCCATTCGTGCTCATGAGGACGCATCTTCTCCCGATGTTATCACCGATCA
AGAAAAACGGAGTCCAGACCTAAACCGAGAAAAGAACAAGATTGTGGACT
AAATCGAATAGTTAGCCATATTTTGGTACTGAGTATCACCAAGCTAGCTC
GAAGATCAATGGACGTTGGAGATTTGATCACACTATCAATTGGACATTTG
GGTATAGTTAGTCTCAACATTTTGAGTACGGCATGTATAGGGACTTGGTC
TTTTTGTTAAATGTCATATTTGTTTAGCCAAATG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding