g.raimondii_cottongen_reftransV1_0000146, g.raimondii_cottongen_reftransV1_0000146 (contig) Gossypium raimondii

Overview
Nameg.raimondii_cottongen_reftransV1_0000146
Unique Nameg.raimondii_cottongen_reftransV1_0000146
Typecontig
OrganismGossypium raimondii (Gossypium raimondii)
Sequence length784
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MB82_GOSAR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gossypium arboreum GN=F383_31199 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.271e-22
Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 3
Query:    3 KVCKAEELTKEKRKAESEARDARKRPMGKSFQSQFKKSREIHSRSHASVGFSNRNRGNQCSGYKA*TTFIASVDN-RPNKSGCPHYGRCHPGKCQMNDRACFKCGFQDHFIKDCFEMTKKEKFQSTRLSNTSYRGRPPK 416
            + CKA++L KEKRK + E ++ R R   KSF+S  KK R+  SRS  ++G+SNR+R    S +K   T IASV N + +   C H G+ H G C++ DRAC +CG  DHFI+D  E  ++E  Q +R S  + R   P+
Sbjct:  162 RACKAKDLGKEKRKVDYEVKEVRTRSSAKSFESASKKFRDDSSRSKVNMGYSNRDRAKSHSNFKTSATSIASVRNVKSDSPECKHCGKRHLGNCRLYDRACSRCGSLDHFIRDYPESVEEESGQDSRPSGNASRVDLPE 300          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MXC0_GOSAR (Chaperone surA OS=Gossypium arboreum GN=F383_30551 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.476e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 3
Query:  324 HFIKDCFEMTKKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVITDQEKRSP 566
            HFI+DC EM +K+KFQ+  LSNT  RGRPP+N  NGT+S+ V KDL  R + RAP R YAI A E ASSPD+  D+  + P
Sbjct:  209 HFIRDCPEMAEKDKFQNAILSNTVTRGRPPRNTRNGTNSRGVVKDLTARLEVRAPARTYAILAREYASSPDIEPDESGKLP 289          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MZS0_GOSAR (Alanine--tRNA ligase OS=Gossypium arboreum GN=F383_33896 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.541e-20
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769
            E  P+P KEQD GLNRI     V SI KLA+ S DVG  ITLS G+LGIVSLNILS ACIGTWS C +SY
Sbjct:    2 EPGPRPEKEQDFGLNRINCPYFVTSIAKLAQGSKDVGGSITLSTGYLGIVSLNILSMACIGTWSICYLSY 71          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P0D6_GOSAR (Replicase polyprotein 1a OS=Gossypium arboreum GN=F383_24448 PE=4 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.291e-17
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1
Query:  631 EYHQASSKINGRWRFDHTINWTFGYS*SQHFEYGMYRDLVFLLNVIFV 774
            +YHQAS+ I GR R DHTINWTFGYS SQHFEYGMYRDLVFLL+VI +
Sbjct:   23 QYHQASTGIEGRPRLDHTINWTFGYSQSQHFEYGMYRDLVFLLSVILI 70          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P7R2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08916 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.739e-17
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 2
Query:  632 SITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSYLFSQM 784
            SITKLAR S DV D ITLSIGHLGIVSLNILS ACIGTWSFC MSY +SQ+
Sbjct:    8 SITKLARESKDVRDSITLSIGHLGIVSLNILSMACIGTWSFCYMSYWYSQI 58          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N4Z4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_35162 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.260e-16
Identity = 43/70 (61.43%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769
            E  P+P KEQD G+NRI     V SI        +VG  ITLS GHLGIVSLNILS  CIGTWSFC MSY
Sbjct:    2 EFGPRPGKEQDFGVNRINCPYFVPSIANPTWELKNVGGSITLSNGHLGIVSLNILSMVCIGTWSFCYMSY 71          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N9Y5_GOSAR (ATP-dependent permease MDL1 OS=Gossypium arboreum GN=F383_07341 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.690e-16
Identity = 46/66 (69.70%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC 757
            ESR +P KEQD  LNRI     V SI KLAR S D+ D ITLSIG LGIVSLN LS ACIGTWSFC
Sbjct:    2 ESRLRPGKEQDFRLNRINCPYFVPSIAKLARGSKDIRDSITLSIGLLGIVSLNNLSMACIGTWSFC 67          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N553_GOSAR (Large structural OS=Gossypium arboreum GN=F383_35090 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.537e-15
Identity = 52/102 (50.98%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRI-------------------VSHIL--VLS------ITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSYLFSQM 784
            ES+ +P KEQD GLN+I                   V H+   +LS      I KLA    DVGD ITLS GHLGIVS NILS AC GTWSFC MSY  SQM
Sbjct:    2 ESKSRPEKEQDFGLNQINCPYFVPGSMWLRLKHYMQVFHVYDCILSVQRVNLIAKLAWGLKDVGDSITLSTGHLGIVSHNILSMACTGTWSFCYMSYWSSQM 103          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0PEZ0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07331 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.460e-15
Identity = 42/62 (67.74%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGT 745
            ES P+  +EQD GLNRI     V S   LAR S DVGDLITLSIG+LGIVSLNILS  CIGT
Sbjct:    2 ESGPRLGEEQDFGLNRINCPYFVPSTANLARGSKDVGDLITLSIGYLGIVSLNILSMTCIGT 63          
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0PNT0_GOSAR (Metal-nicotianamine transporter YSL3-like protein OS=Gossypium arboreum GN=F383_02762 PE=4 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.060e-14
Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 2
Query:  614 SHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769
            S+  + SI KLAR S DVGD ITLSIGHLGIVSLNILS ACIG WSFC MSY
Sbjct:   11 SYKTIASIAKLARGSTDVGDSITLSIGHLGIVSLNILSMACIGIWSFCYMSY 62          
The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B0MB82_GOSAR6.271e-2242.452,3-bisphosphoglycerate-independent phosphoglycera... [more]
A0A0B0MXC0_GOSAR2.476e-2056.79Chaperone surA OS=Gossypium arboreum GN=F383_30551... [more]
A0A0B0MZS0_GOSAR2.541e-2067.14Alanine--tRNA ligase OS=Gossypium arboreum GN=F383... [more]
A0A0B0P0D6_GOSAR5.291e-1779.17Replicase polyprotein 1a OS=Gossypium arboreum GN=... [more]
A0A0B0P7R2_GOSAR9.739e-1782.35Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0N4Z4_GOSAR1.260e-1661.43Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0N9Y5_GOSAR1.690e-1669.70ATP-dependent permease MDL1 OS=Gossypium arboreum ... [more]
A0A0B0N553_GOSAR1.537e-1550.98Large structural OS=Gossypium arboreum GN=F383_350... [more]
A0A0B0PEZ0_GOSAR3.460e-1567.74Uncharacterized protein OS=Gossypium arboreum GN=F... [more]
A0A0B0PNT0_GOSAR1.060e-1476.92Metal-nicotianamine transporter YSL3-like protein ... [more]

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BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 4..21
e-value: 5.0E-4
score: 19.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 6..19
score: 8.532

Sequences
The following sequences are available for this feature:

contig sequence

>g.raimondii_cottongen_reftransV1_0000146 ID=g.raimondii_cottongen_reftransV1_0000146; Name=g.raimondii_cottongen_reftransV1_0000146; organism=Gossypium raimondii; type=contig; length=784bp
TCAAGGTTTGTAAAGCAGAGGAACTGACTAAGGAAAAGAGAAAAGCCGAG
TCTGAGGCTAGAGATGCAAGAAAGAGGCCGATGGGTAAGTCGTTCCAATC
TCAGTTTAAAAAATCTAGAGAGATACATTCCCGTTCTCATGCTTCAGTTG
GGTTTTCAAATAGAAACCGTGGAAATCAGTGTTCGGGTTATAAAGCTTAG
ACTACTTTTATTGCGAGCGTTGATAATCGACCCAATAAATCTGGATGCCC
ACATTATGGTAGATGTCACCCCGGCAAGTGCCAAATGAATGACCGAGCTT
GTTTCAAGTGTGGTTTCCAAGACCATTTCATTAAAGATTGCTTTGAGATG
ACTAAAAAAGAAAAGTTTCAGAGTACAAGGCTAAGTAATACTTCTTATAG
AGGGAGACCCCCGAAAAATATCGGGAATGGAACTAGTAGCAAAAATGTGA
CAAAGGATTTAGCAGGGAGATTCGACGCTAGAGCACCGGTTAGAGCTTAT
GCCATTCGTGCTCATGAGGACGCATCTTCTCCCGATGTTATCACCGATCA
AGAAAAACGGAGTCCAGACCTAAACCGAGAAAAGAACAAGATTGTGGACT
AAATCGAATAGTTAGCCATATTTTGGTACTGAGTATCACCAAGCTAGCTC
GAAGATCAATGGACGTTGGAGATTTGATCACACTATCAATTGGACATTTG
GGTATAGTTAGTCTCAACATTTTGAGTACGGCATGTATAGGGACTTGGTC
TTTTTGTTAAATGTCATATTTGTTTAGCCAAATG
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Annotated Terms
The following terms have been associated with this contig:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding