g.raimondii_cottongen_reftransV1_0000146, g.raimondii_cottongen_reftransV1_0000146 (contig) Gossypium raimondii
Overview
Analyses
This contig is derived from or has results from the following analyses
Homology
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MB82_GOSAR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gossypium arboreum GN=F383_31199 PE=4 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 6.271e-22 Identity = 59/139 (42.45%), Postives = 84/139 (60.43%), Query Frame = 3 Query: 3 KVCKAEELTKEKRKAESEARDARKRPMGKSFQSQFKKSREIHSRSHASVGFSNRNRGNQCSGYKA*TTFIASVDN-RPNKSGCPHYGRCHPGKCQMNDRACFKCGFQDHFIKDCFEMTKKEKFQSTRLSNTSYRGRPPK 416 + CKA++L KEKRK + E ++ R R KSF+S KK R+ SRS ++G+SNR+R S +K T IASV N + + C H G+ H G C++ DRAC +CG DHFI+D E ++E Q +R S + R P+ Sbjct: 162 RACKAKDLGKEKRKVDYEVKEVRTRSSAKSFESASKKFRDDSSRSKVNMGYSNRDRAKSHSNFKTSATSIASVRNVKSDSPECKHCGKRHLGNCRLYDRACSRCGSLDHFIRDYPESVEEESGQDSRPSGNASRVDLPE 300
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MXC0_GOSAR (Chaperone surA OS=Gossypium arboreum GN=F383_30551 PE=4 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.476e-20 Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 3 Query: 324 HFIKDCFEMTKKEKFQSTRLSNTSYRGRPPKNIGNGTSSKNVTKDLAGRFDARAPVRAYAIRAHEDASSPDVITDQEKRSP 566 HFI+DC EM +K+KFQ+ LSNT RGRPP+N NGT+S+ V KDL R + RAP R YAI A E ASSPD+ D+ + P Sbjct: 209 HFIRDCPEMAEKDKFQNAILSNTVTRGRPPRNTRNGTNSRGVVKDLTARLEVRAPARTYAILAREYASSPDIEPDESGKLP 289
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0MZS0_GOSAR (Alanine--tRNA ligase OS=Gossypium arboreum GN=F383_33896 PE=4 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.541e-20 Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769 E P+P KEQD GLNRI V SI KLA+ S DVG ITLS G+LGIVSLNILS ACIGTWS C +SY Sbjct: 2 EPGPRPEKEQDFGLNRINCPYFVTSIAKLAQGSKDVGGSITLSTGYLGIVSLNILSMACIGTWSICYLSY 71
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P0D6_GOSAR (Replicase polyprotein 1a OS=Gossypium arboreum GN=F383_24448 PE=4 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 5.291e-17 Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 Query: 631 EYHQASSKINGRWRFDHTINWTFGYS*SQHFEYGMYRDLVFLLNVIFV 774 +YHQAS+ I GR R DHTINWTFGYS SQHFEYGMYRDLVFLL+VI + Sbjct: 23 QYHQASTGIEGRPRLDHTINWTFGYSQSQHFEYGMYRDLVFLLSVILI 70
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0P7R2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_08916 PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 9.739e-17 Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 2 Query: 632 SITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSYLFSQM 784 SITKLAR S DV D ITLSIGHLGIVSLNILS ACIGTWSFC MSY +SQ+ Sbjct: 8 SITKLARESKDVRDSITLSIGHLGIVSLNILSMACIGTWSFCYMSYWYSQI 58
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N4Z4_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_35162 PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.260e-16 Identity = 43/70 (61.43%), Postives = 46/70 (65.71%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769 E P+P KEQD G+NRI V SI +VG ITLS GHLGIVSLNILS CIGTWSFC MSY Sbjct: 2 EFGPRPGKEQDFGVNRINCPYFVPSIANPTWELKNVGGSITLSNGHLGIVSLNILSMVCIGTWSFCYMSY 71
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N9Y5_GOSAR (ATP-dependent permease MDL1 OS=Gossypium arboreum GN=F383_07341 PE=4 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.690e-16 Identity = 46/66 (69.70%), Postives = 48/66 (72.73%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC 757 ESR +P KEQD LNRI V SI KLAR S D+ D ITLSIG LGIVSLN LS ACIGTWSFC Sbjct: 2 ESRLRPGKEQDFRLNRINCPYFVPSIAKLARGSKDIRDSITLSIGLLGIVSLNNLSMACIGTWSFC 67
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0N553_GOSAR (Large structural OS=Gossypium arboreum GN=F383_35090 PE=4 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.537e-15 Identity = 52/102 (50.98%), Postives = 57/102 (55.88%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRI-------------------VSHIL--VLS------ITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSYLFSQM 784 ES+ +P KEQD GLN+I V H+ +LS I KLA DVGD ITLS GHLGIVS NILS AC GTWSFC MSY SQM Sbjct: 2 ESKSRPEKEQDFGLNQINCPYFVPGSMWLRLKHYMQVFHVYDCILSVQRVNLIAKLAWGLKDVGDSITLSTGHLGIVSHNILSMACTGTWSFCYMSYWSSQM 103
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0PEZ0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_07331 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.460e-15 Identity = 42/62 (67.74%), Postives = 45/62 (72.58%), Query Frame = 2 Query: 560 ESRPKPRKEQDCGLNRIVSHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGT 745 ES P+ +EQD GLNRI V S LAR S DVGDLITLSIG+LGIVSLNILS CIGT Sbjct: 2 ESGPRLGEEQDFGLNRINCPYFVPSTANLARGSKDVGDLITLSIGYLGIVSLNILSMTCIGT 63
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Match: A0A0B0PNT0_GOSAR (Metal-nicotianamine transporter YSL3-like protein OS=Gossypium arboreum GN=F383_02762 PE=4 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.060e-14 Identity = 40/52 (76.92%), Postives = 42/52 (80.77%), Query Frame = 2 Query: 614 SHILVLSITKLARRSMDVGDLITLSIGHLGIVSLNILSTACIGTWSFC*MSY 769 S+ + SI KLAR S DVGD ITLSIGHLGIVSLNILS ACIG WSFC MSY Sbjct: 11 SYKTIASIAKLARGSTDVGDSITLSIGHLGIVSLNILSMACIGIWSFCYMSY 62 The following BLAST results are available for this feature:
BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy TrEMBL
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs TrEMBL) Total hits: 25
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BLAST of g.raimondii_cottongen_reftransV1_0000146 vs. ExPASy Swiss-Prot
Analysis Date: 2016-11-09 (Homology Analysis for Gossypium raimondii CottonGen RefTrans V1 vs SwissProt) Total hits: 0
InterPro
Analysis Name: InterProScan analysis for Gossypium raimondii CottonGen RefTrans V1
Date Performed: 2016-11-09
Sequences
The
following sequences are available for this feature:
contig sequence >g.raimondii_cottongen_reftransV1_0000146 ID=g.raimondii_cottongen_reftransV1_0000146; Name=g.raimondii_cottongen_reftransV1_0000146; organism=Gossypium raimondii; type=contig; length=784bpback to top Annotated Terms
The
following terms have been associated with
this contig:
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