GWAS0000110 | Cottongen

Genome Location

GWAS Overview


GWAS Label	GWAS0000110 [ MapViewer ]
Published Symbol	SD
Trait Name	stem diameter
Trait Alias	N/A
GWAS Marker	AD1-NBI_SNP_A12_76550238
GWAS Study	AD1-NBI_root-traits_CRI-Chen-2022_GWAS
Genome Assembly	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Statistical Mothod	N/A
Experimental Model	N/A
GWAS Panel	AD1-NBI_CRI-Cui-200
LOD	N/A
P Value	3.4673685045253E-7
R2	N/A
Unique key	3785-AD1-NBI_CRI-Cui-200\|SD\|CN_HA_GH_Hyd3\|AD1-NBI_SNP_A12_76550238
MAF	0.5
Allele	A/T
Gene association	nonsynonymous_coding
LgP	6.46
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Cotton Trait Ontology**
Term	Definition
44:stem diameter	stem diameter

Genome Location


Name	Type	Location	Analysis	MapViewer
A12	chromosome	A12:76550238..76550238	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	View

Publications


Year	Publication
2022	Cui Z, Liu S, Ge C, Shen Q, Zhang S, Ma H, Liu R, Zhao X, Liu R, Li P, Wang H, Wu Q, Pang C, Chen J. Genome-wide association study reveals that GhTRL1 and GhPIN8 affect cotton root development. Theoretical and applied genetics. 2022 Aug 14; 135(9):3161-3176.

Germplasm


Stock Name	Type
AD1-NBI_CRI-Cui-200	panel

Properties


Property Name	Value
Unique key	3785-AD1-NBI_CRI-Cui-200\|SD\|CN_HA_GH_Hyd3\|AD1-NBI_SNP_A12_76550238
Published symbol	SD
MAF	0.5
Allele	A/T
Gene association	nonsynonymous_coding
P value	3.4673685045253E-7
LgP	6.46