GWAS0000086 | Cottongen

Genome Location

GWAS Overview


GWAS Label	GWAS0000086 [ MapViewer ]
Published Symbol	Boll weight
Trait Name	seed cotton weight per boll
Trait Alias	N/A
GWAS Marker	CRI-A2_SNP_Ga10_85988620
GWAS Study	A2-CRI_key-agronomics_CRI-Li-2018_GWAS
Genome Assembly	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Statistical Mothod	N/A
Experimental Model	N/A
GWAS Panel	A2-CRI_Du-215
LOD	N/A
P Value	5.56333783E-8
R2	N/A
Unique key	3779-A2-CRI_Du-215\|BWT\|CN_HA_Anyang\|CRI-A2_SNP_Ga10_85988620
MAF	0.1
Allele	C/T
LgP	7.25
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Cotton Trait Ontology**
Term	Definition
MAIN:000115471	seed cotton weight per boll

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr10_CRI-A2_v1.0.a1	chromosome	Chr10_CRI-A2_v1.0.a1:85988620..85988620	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	View

Publications


Year	Publication
2018	Du X, Huang G, He S, Yang Z, Sun G, Ma X, Li N, Zhang X, Sun J, Liu M, Jia Y, Pan Z, Gong W, Liu Z, Zhu H, Ma L, Liu F, Yang D, Wang F, Fan W, Gong Q, Peng Z, Wang L, Wang X, Xu S, Shang H, Lu C, Zheng H, Huang S, Lin T, Zhu Y, Li F. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits. Nature genetics. 2018 May 07.

Germplasm


Stock Name	Type
A2-CRI_Du-215	panel

Properties


Property Name	Value
Unique key	3779-A2-CRI_Du-215\|BWT\|CN_HA_Anyang\|CRI-A2_SNP_Ga10_85988620
Published symbol	Boll weight
MAF	0.1
Allele	C/T
P value	5.56333783E-8
LgP	7.25