GWAS0000064 | Cottongen

Genome Location

GWAS Overview


GWAS Label	GWAS0000064 [ MapViewer ]
Published Symbol	C16_0
Trait Name	seed palmitic acid content
Trait Alias	N/A
GWAS Marker	CRI-A2_SNP_Ga08_124297780
GWAS Study	A2-CRI_key-agronomics_CRI-Li-2018_GWAS
Genome Assembly	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Statistical Mothod	N/A
Experimental Model	N/A
GWAS Panel	A2-CRI_Du-215
LOD	N/A
P Value	5.54991637E-7
R2	N/A
Unique key	3779-A2-CRI_Du-215\|C16_0\|CN_HA_Anyang\|CRI-A2_SNP_Ga08_124297780
MAF	0.22558139534884
Allele	A/T
LgP	6.26
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Cotton Trait Ontology**
Term	Definition
44:seed palmitic acid content	seed palmitic acid content

Genome Location


Name	Type	Location	Analysis	MapViewer
Chr08_CRI-A2_v1.0.a1	chromosome	Chr08_CRI-A2_v1.0.a1:124297780..124297780	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	View

Publications


Year	Publication
2018	Du X, Huang G, He S, Yang Z, Sun G, Ma X, Li N, Zhang X, Sun J, Liu M, Jia Y, Pan Z, Gong W, Liu Z, Zhu H, Ma L, Liu F, Yang D, Wang F, Fan W, Gong Q, Peng Z, Wang L, Wang X, Xu S, Shang H, Lu C, Zheng H, Huang S, Lin T, Zhu Y, Li F. Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits. Nature genetics. 2018 May 07.

Germplasm


Stock Name	Type
A2-CRI_Du-215	panel

Properties


Property Name	Value
Unique key	3779-A2-CRI_Du-215\|C16_0\|CN_HA_Anyang\|CRI-A2_SNP_Ga08_124297780
Published symbol	C16_0
MAF	0.22558139534884
Allele	A/T
P value	5.54991637E-7
LgP	6.26