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Marker Overview
| Name | NAU3935 |
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| Genbank ID | CO125314 |
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| Type | SSR |
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| Species | Gossypium raimondii |
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| Source Type | EST |
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| Repeat Motif | (gtt)4(gat)5 |
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| PCR Condition | Annealing temperature: 57 |
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| Primer 1 | NAU3935_F: GATTGTGATGAGTGCTTTGG |
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| Primer 2 | NAU3935_R: CATCGGGTTAACGATTCTTC |
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| Restriction Enzyme | NotI; EcoRV |
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| Publication | [view all] |
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| Contact | Zhang, Tian-Zhen
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| Comment | Primer data obtained in 2007-05 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Chr09 | chromosome | NAU3935:1..814 .
Chr09:1163697..1164742 + |
| Chr9 | chromosome | NAU3935:1..814 .
Chr9:1186630..1187675 + |
Publications
| Year | Publication |
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| 2007 | Guo W, Cai C, Wang C, Han Z, Song X, Wang K, Niu X, Wang C, Lu K, Shi B. A microsatellite-based, gene-rich linkage map reveals genome structure, function and evolution in Gossypium. Genetics. 2007; 176(1):527-541. |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | Emian-22 x 3-79, BC1 (2011) | AD_ch05_At.05 | N/A | 104.64 | NAU3935a | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch19_Dt.05 | N/A | 155.16 | NAU3935b | View |
| 3 | Hai-7124 x Junmian-1, BC1 (2008) part | AD_ch19_Dt.05 | N/A | 59.8 | NAU3935 | View |
| 4 | Hai-7124 x Junmian-1, F2 (2008) part | AD_ch05_At.05 | N/A | 70.9 | NAU3935 | View |
| 5 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 119 | NAU3935 | View |
| 6 | AD-genome wide Reference Map (2009) | AD_ch05_At.05 | N/A | 70 | NAU3935 | View |
| 7 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch19_Dt.05 | N/A | 146.9 | NAU3935 | View |
| 8 | SG 747 x Giza 75, BIL (2013) | AD_ch19_Dt.05 | N/A | 63.1 | NAU3935 | View |
| 9 | TM-1 x Hai-7124, BC1 (2008) | AD_ch05_At.05 | N/A | 58.55 | NAU3935-295 | View |
| 10 | TM-1 x Hai-7124, BC1 (2007) | AD_ch05_At.05 | N/A | 66.5 | NAU3935-295 | View |
| 11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 149.9 | NAU3935-295 | View |
| 12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch19_Dt.05 | N/A | 63.1 | NAU3935-245 | View |
| 13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch19_Dt.05 | N/A | 62.86 | NAU3935-245 | View |
| 14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch19_Dt.05 | N/A | 127.5 | NAU3935-245 | View |
| 15 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch19_Dt.05 | N/A | 85.2 | NAU3935 | View |
| 16 | TM-1 x Hai-7124, BC1 (2012) | AD_ch05_At.05 | N/A | 118.5 | NAU3935-900 | View |
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