USDA_SNP0328, USDA_SNP0328 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0328
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018217.1chromosomeCM018217.1:1099917..1099979 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:98749082..98749144 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:1054422..1054484 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:1209620..1209682 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:1014189..1014251 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:1175146..1175208 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:16632997..16633059 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:82284154..82284216 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:1123635..1123697 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:106920295..106920357 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:1098559..1098621 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:107120639..107120701 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:1116516..1116578 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:104580439..104580501 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:1121044..1121106 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:103169430..103169492 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:99064025..99064087 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:1099819..1099881 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:100998911..100998973 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:103975913..103975975 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:108732837..108732899 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:1119486..1119548 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:101146538..101146600 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:1161257..1161319 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:107024617..107024679 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:91777031..91777093 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:101393765..101393827 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:1064323..1064385 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:72804568..72804630 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:1075034..1075096 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:1168170..1168232 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:1073147..1073209 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:946907..946969 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:868403..868465 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:1156997..1157059 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:867066..867128 +Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:1027752..1027814 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0328 ID=USDA_SNP0328; Name=USDA_SNP0328; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGCTCCTATTATAACAAATTTCCCAT[C/T]CACATCGTCCTTG
TTTGATGAACTTTTGGG