USDA_SNP0327, USDA_SNP0327 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0327
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:8765661..8765723 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:98360094..98360156 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:25427262..25427324 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:40565824..40565886 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:8877888..8877950 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:8963281..8963343 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:8592545..8592607 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:8961936..8961998 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:8940244..8940306 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:8957802..8957864 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:8742605..8742667 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:8718605..8718667 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:9277800..9277862 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:8682304..8682366 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:8990337..8990399 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:9359945..9360007 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:9179789..9179851 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:10174509..10174571 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:144759650..144759712 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0327 ID=USDA_SNP0327; Name=USDA_SNP0327; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGCCTTATGTTGA[G/T]ATGTAGCCAGAGTCTTGATTGGATCA
TTTGAATGTTTTAAGTG