USDA_SNP0326, USDA_SNP0326 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0326
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:99316662..99316724 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_13chromosomeKI_13:37416590..37416652 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:116185041..116185103 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:115239700..115239762 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:52981743..52981805 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr13chromosomeAt_chr13:21457646..21457708 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:72531656..72531718 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:99053572..99053634 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:101446530..101446592 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:99548985..99549047 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:97990374..97990436 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:100263978..100264040 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:103656745..103656807 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:101246099..101246161 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:101379402..101379464 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:102272304..102272366 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:107662260..107662322 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:107561905..107561967 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:112166248..112166310 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:112101376..112101438 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:10844739..10844801 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:35598266..35598328 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:27657020..27657081 -Gossypium gossypioides (D6) genome ISU_v1n/a
F13chromosomeF13:87325834..87325896 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0326 ID=USDA_SNP0326; Name=USDA_SNP0326; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGCCGCTGTGCTTCGC[A/T]TTGGCATTATCACGTAAAGAATG
CCATTGAAGAACTTTGC