USDA_SNP0063, USDA_SNP0063 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0063
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:63271932..63271994 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:59295724..59295786 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:2097419..2097481 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:12615598..12615660 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold192600supercontigscaffold192600:59..121 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:66257782..66257844 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:66551020..66551082 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:66104012..66104074 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:63400158..63400220 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:63405378..63405440 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:65143693..65143755 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:64971322..64971384 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:67106806..67106868 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:63667906..63667968 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:66846308..66846370 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:60197637..60197699 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:101853878..101853940 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:61822517..61822579 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:46706808..46706871 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:44077694..44077756 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:64006973..64007035 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:34663116..34663178 +Gossypium gossypioides (D6) genome ISU_v1n/a
E08chromosomeE08:119805825..119805887 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:102245359..102245421 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0063 ID=USDA_SNP0063; Name=USDA_SNP0063; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAATTTTAATAAAGAAGAAAAAACTAAGATT[C/T]GTTGCTAGC
TTTTCATCAGAGTCATA