USDA_SNP0052, USDA_SNP0052 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0052
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:24272639..24272700 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:35494982..35495044 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:20978626..20978689 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr3chromosomeAt_chr3:90069182..90069244 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:22462993..22463055 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:24610397..24610459 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:24140471..24140533 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:24222310..24222372 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:25075273..25075335 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:24539865..24539926 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:24413813..24413874 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:24455458..24455520 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:25345254..25345316 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:24697379..24697441 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:25246305..25246367 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:96132496..96132558 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:89714745..89714807 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:30463704..30463766 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:31024070..31024133 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:31060656..31060719 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr10chromosomeChr10:43001870..43001933 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0052 ID=USDA_SNP0052; Name=USDA_SNP0052; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATTTACAGTTCCTTTTTTTATTTTTCTCTTTTTGGATTTCAT[A/
T]TTTTTTTATAACATA