USDA_SNP0043, USDA_SNP0043 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0043
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018216.1chromosomeCM018216.1:55963138..55963200 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:91746423..91746485 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:11193481..11193543 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:35671573..35671635 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:120175881..120175943 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:11223106..11223168 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:19710296..19710358 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:21785508..21785570 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:40833321..40833383 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:56693590..56693652 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:86085821..86085883 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:58524617..58524679 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:58957177..58957239 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:97268109..97268171 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:59953088..59953150 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:95202953..95203015 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:56958152..56958214 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:90478382..90478444 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:56506739..56506801 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:90928245..90928307 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:57834677..57834739 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:93137804..93137866 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:58837025..58837087 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:92957370..92957432 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:60309314..60309376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:99167125..99167187 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:57438292..57438354 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:93391735..93391797 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:60895752..60895814 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:98776713..98776775 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:15314279..15314341 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:15442337..15442399 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:52053098..52053160 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:14524531..14524593 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:54837579..54837641 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:41021716..41021778 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:35786949..35787011 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:56468616..56468678 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:36164984..36165046 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:30681459..30681521 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:37553858..37553920 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:106733947..106734009 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:96447705..96447767 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:28022688..28022750 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0043 ID=USDA_SNP0043; Name=USDA_SNP0043; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATGCTTGTTATATGTATGCACTC[A/G]GTCAATGTCGTTTTCCT
ACTTGGTGACACAATTT