USDA_CFB2305, USDA_CFB2305 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB2305
AliasCFB2305
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCATTTAAAGACCAAT
3' Flanking SequenceAGATATATTTCATGAACAGTAACAAAATCAATACATATCATATATAGATTAAAATCCTAC CCCTATCCACTA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:49316024..49316111 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:44981826..44981913 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:13812003..13812090 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:16584980..16585067 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:48697745..48697832 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:49889158..49889245 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:50854754..50854841 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:51562829..51562914 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:50230152..50230239 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:43098582..43098669 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:51657282..51657369 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:50505789..50505876 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:51847022..51847109 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:50813668..50813755 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:52350704..52350791 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:45892851..45892938 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:46225802..46225889 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:37122198..37122285 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:36109264..36109351 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:29293766..29293851 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:45489186..45489187 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB2305 ID=USDA_CFB2305; Name=USDA_CFB2305; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
CATTTAAAGACCAAT[C/T]AGATATATTTCATGAACAGTAACAAAATCA
ATACATATCATATATAGATTAAAATCCTACCCCTATCCACTA