USDA_CFB2168, USDA_CFB2168 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB2168
AliasCFB2168
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTGAATGAGTTAGGGTAAATGAACACCCTGGTTAAGTTCTTCCTGTGGAGCCTCTGGTAGG GAAGTTATTACTAACCAG
3' Flanking SequenceCTAGTAAGT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:45121985..45122072 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:41305072..41305159 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:9545456..9545543 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:44190590..44190677 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:45162897..45162984 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:46203017..46203104 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:47121568..47121655 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:45616679..45616766 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:47172194..47172281 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:47005446..47005533 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:46150382..46150469 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:47133309..47133396 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:46202839..46202926 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:47851677..47851764 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:41791633..41791720 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:42322987..42323074 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:34724874..34724961 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr09chromosomechr09:34724580..34724667 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:31296388..31296475 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:32202124..32202211 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:41375755..41375756 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB2168 ID=USDA_CFB2168; Name=USDA_CFB2168; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
TGAATGAGTTAGGGTAAATGAACACCCTGGTTAAGTTCTTCCTGTGGAGC
CTCTGGTAGGGAAGTTATTACTAACCAG[A/G]CTAGTAAGT