USDA_CFB1945, USDA_CFB1945 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB1945
AliasCFB1945
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTGGAACTCGTGGATGTGGTACCCGTGAGC
3' Flanking SequenceCGGCGGGCGTCAAAGAGGAGCTGGAGCTGAGCCATCTTCGATGGGCAATATACCCAATTT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:46213226..46213315 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:42363012..42363101 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:16571268..16571357 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:21204788..21204877 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:45368564..45368653 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:46281010..46281099 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:47388339..47388428 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:48323385..48323474 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:46816132..46816221 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:46118708..46118797 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:48066617..48066706 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:47209430..47209519 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:48337176..48337265 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:47294247..47294336 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:49088577..49088666 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:42852576..42852665 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:43368626..43368715 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:35496424..35496512 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:34334563..34334652 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:42432696..42432697 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB1945 ID=USDA_CFB1945; Name=USDA_CFB1945; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
TGGAACTCGTGGATGTGGTACCCGTGAGC[A/G]CGGCGGGCGTCAAAGA
GGAGCTGGAGCTGAGCCATCTTCGATGGGCAATATACCCAATTT