USDA_CFB1878, USDA_CFB1878 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB1878
AliasCFB1878
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTCCTTAGTGTAATAAAAAATGAGCAAACTAATTGAAAGACTAATATGCC
3' Flanking SequenceTCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGG
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:49432609..49432694 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:45106817..45106902 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:16691765..16691850 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:48814908..48814993 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:50006367..50006452 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:50967839..50967924 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:51680074..51680159 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:50347456..50347541 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:42982030..42982115 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:51773055..51773140 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:50625581..50625666 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:51972403..51972488 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:50930281..50930366 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:52468006..52468091 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:46017677..46017762 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:46366513..46366598 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:37223747..37223832 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:49116671..49116757 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:29349789..29349874 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:45619237..45619238 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB1878 ID=USDA_CFB1878; Name=USDA_CFB1878; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
TCCTTAGTGTAATAAAAAATGAGCAAACTAATTGAAAGACTAATATGCC[
A/G]TCTATCAAGTCCAATTGGGGAGATGCTTTGTCTTGG