USDA_CFB1769, USDA_CFB1769 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB1769
AliasCFB1769
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceCCCGTGTCTTAGGC
3' Flanking SequenceGTGTCGGCATTCGATGTGGAGCACACGGCCGTGTCCCAGCCTATGCCCATGCCCATGTAA CTCTTTGACTTGGGT
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:12854746..12854835 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr1chromosomeDt_chr1:48764990..48765079 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:12865658..12865747 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:13278038..13278127 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:12696197..12696286 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:13246092..13246181 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:13124879..13124968 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:13289259..13289348 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:12974272..12974361 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:13263227..13263316 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017707.1chromosomeCM017707.1:13145190..13145279 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:13439942..13440031 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:43791652..43791653 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB1769 ID=USDA_CFB1769; Name=USDA_CFB1769; organism=Gossypium hirsutum; type=genetic_marker; length=94bp
CCCGTGTCTTAGGC[C/T]GTGTCGGCATTCGATGTGGAGCACACGGCCG
TGTCCCAGCCTATGCCCATGCCCATGTAACTCTTTGACTTGGGT