USDA_CFB1676, USDA_CFB1676 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB1676
AliasCFB1676
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceCCATAGGATAGGAAGTGTTTAGGGATTTCTTCGACTTCGAGTCGATCAGGCACTGGGTGC CAATTTACTTCGGTTTAAC
3' Flanking SequenceGACGAG
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:45242522..45242607 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:41413971..41414056 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr9chromosomeDt_chr9:9423703..9423788 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:44312200..44312285 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:45283630..45283715 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:46322374..46322459 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:47242334..47242419 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:45737457..45737542 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017627.1chromosomeCM017627.1:46256213..46256298 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:47288243..47288328 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:46323347..46323432 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:47972455..47972540 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:41900555..41900640 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:41484834..41484835 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB1676 ID=USDA_CFB1676; Name=USDA_CFB1676; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
CCATAGGATAGGAAGTGTTTAGGGATTTCTTCGACTTCGAGTCGATCAGG
CACTGGGTGCCAATTTACTTCGGTTTAAC[A/C]GACGAG