USDA_CFB0504, USDA_CFB0504 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0504
AliasCFB0504
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceACAGCAAGCACGATTATTCACTGTTTCAAAAATTTTATGTGCTGTTGCACACAGGGGGAA AAATT
3' Flanking SequenceTTTCTGAAGCAAGAAACACAGCTCCTCACTGTTTC
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:71841962..71842062 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:9722326..9722426 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A04chromosomeA04:54358268..54358368 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:75388136..75388236 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:78324667..78324767 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:75522822..75522922 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:71151698..71151798 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:72194499..72194599 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:72780317..72780417 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:74181922..74182022 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:82406037..82406137 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:72565007..72565107 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:79167214..79167314 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:98816153..98816253 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:100731480..100731580 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:9923624..9923722 -Gossypium anomalum (B1) genome NSF_v1n/a
F04chromosomeF04:82524128..82524228 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:156618337..156618437 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr12chromosomeChr12:27721186..27721187 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0504 ID=USDA_CFB0504; Name=USDA_CFB0504; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
ACAGCAAGCACGATTATTCACTGTTTCAAAAATTTTATGTGCTGTTGCAC
ACAGGGGGAAAAATT[A/C]TTTCTGAAGCAAGAAACACAGCTCCTCACT
GTTTC