USDA_CFB0374, USDA_CFB0374 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0374
AliasCFB0374
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCCCGTGTGGTTTCAAACGCCATGTTTACGGCTTTTCAGGTTTTC
3' Flanking SequenceCCGATCTACGATGGCAATGGGTGATTACACACCTGATTGCGA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:47226585..47226671 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr9chromosomeDt_chr9:22243430..22243516 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:46619801..46619887 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:47573895..47573981 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:48661677..48661763 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:49335562..49335648 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:48089397..48089483 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:45033368..45033454 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:49532255..49532341 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:48474106..48474192 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:48764633..48764719 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:50102604..50102690 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:14590139..14590140 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0374 ID=USDA_CFB0374; Name=USDA_CFB0374; organism=Gossypium hirsutum; type=genetic_marker; length=91bp
CCCGTGTGGTTTCAAACGCCATGTTTACGGCTTTTCAGGTTTTC[A/G]C
CGATCTACGATGGCAATGGGTGATTACACACCTGATTGCGA