USDA_CFB0331, USDA_CFB0331 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0331
AliasCFB0331
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceAGCTATAGTTTTTGCAATGTGATTTAAAGTAATGCTAGTGTTTACTT
3' Flanking SequenceGATATTTTGATGCTGCAAATGGTTTTGGATGGTTTAATTGTCTTGCAC
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:3465733..3465827 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:4177268..4177363 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:3363148..3363242 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:3063434..3063530 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:4123667..4123762 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:57136838..57136934 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:6112772..6112865 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:51313111..51313206 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:65779134..65779228 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:3607894..3607988 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:3729918..3730013 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:3742084..3742178 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:4209831..4209926 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:3547336..3547430 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:4084570..4084665 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:3652925..3653019 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:4187854..4187949 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:3513305..3513399 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:4591871..4591966 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:3636804..3636898 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:3874427..3874522 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:3785568..3785662 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:4333557..4333652 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:3609417..3609511 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:4205349..4205444 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:3811022..3811116 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:4242291..4242386 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:3623072..3623166 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:4142468..4142563 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:3677429..3677523 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:4319344..4319439 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:4515179..4515274 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:3997792..3997887 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:3389123..3389217 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:3481257..3481351 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_09chromosomeChr_09:3649911..3650007 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:3626336..3626430 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:3302890..3302986 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:2680853..2680949 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:3353097..3353098 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0331 ID=USDA_CFB0331; Name=USDA_CFB0331; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
AGCTATAGTTTTTGCAATGTGATTTAAAGTAATGCTAGTGTTTACTT[A/
C]GATATTTTGATGCTGCAAATGGTTTTGGATGGTTTAATTGTCTTGCAC