USDA_CFB0328, USDA_CFB0328 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0328
AliasCFB0328
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceAGCTAGATGGGAGAGTTCTACTCTAAGTCATACACTAAATCCAAGAGAAGTTAAAATAAA TTTAAAATCGCATAAAGAAATAAAA
3' Flanking SequenceAAC
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:45540118..45540206 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:14014023..14014112 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:40634109..40634197 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr12chromosomeAt_chr12:44779232..44779320 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:45105491..45105579 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:48030959..48031046 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:47132434..47132522 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:48099400..48099488 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:45881472..45881560 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:44827640..44827728 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:46133246..46133334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:46006230..46006318 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:48645873..48645959 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:46544039..46544127 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:48104104..48104192 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:43765067..43765156 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:44030988..44031076 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:31568841..31568929 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:45258864..45258952 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:30941878..30941966 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:29893010..29893098 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr08chromosomeChr08:43261576..43261577 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0328 ID=USDA_CFB0328; Name=USDA_CFB0328; organism=Gossypium hirsutum; type=genetic_marker; length=93bp
AGCTAGATGGGAGAGTTCTACTCTAAGTCATACACTAAATCCAAGAGAAG
TTAAAATAAATTTAAAATCGCATAAAGAAATAAAA[C/T]AAC