USDA_CFB0246, USDA_CFB0246 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0246
AliasCFB0246
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceACCTCCTTTGGACCCTTGTGGTAGAGTAACCTG
3' Flanking SequenceTTTCATTACCATAAGCATGCATACCGGTTTGTGCTTTGGCTTTATTATATCCGCCAATGA GAACCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:53845557..53845657 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5843762..5843862 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:48866018..48866118 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:50265881..50265981 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:49485025..49485125 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53821600..53821700 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56235001..56235101 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55554106..55554206 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56333558..56333658 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54504048..54504148 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:52855944..52856044 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:54646344..54646444 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:54577263..54577363 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:57471924..57472024 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:55165870..55165970 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:56691272..56691372 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:51895935..51896035 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:81878726..81878826 -Gossypium anomalum (B1) genome NSF_v1n/a
chr08chromosomechr08:40408896..40408996 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:38621218..38621318 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:29233561..29233661 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:51314574..51314575 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0246 ID=USDA_CFB0246; Name=USDA_CFB0246; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
ACCTCCTTTGGACCCTTGTGGTAGAGTAACCTG[A/G]TTTCATTACCAT
AAGCATGCATACCGGTTTGTGCTTTGGCTTTATTATATCCGCCAATGAGA
ACCAA