USDA_CFB0238, USDA_CFB0238 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0238
AliasCFB0238
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceCATTTATAATTTTATCCTCT
3' Flanking SequenceTAACTAAAAAATACTCCACGCTAGATTCAAACTAGCATTTAACACCTTAATTGATGACTA GGCTA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:104191249..104191334 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:12719806..12719891 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:130336240..130336324 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:6107650..6107735 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:83920467..83920552 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:113209416..113209501 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:111672454..111672539 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:109261407..109261492 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:106043585..106043670 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:102595869..102595954 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:105719642..105719727 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:109582609..109582694 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:116025081..116025166 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:104676887..104676972 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:113981486..113981571 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:118161078..118161163 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:116333851..116333936 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:60915284..60915368 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:36993779..36993864 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:32281958..32282042 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:39451780..39451864 -Gossypium lobatum (D7) genome ISU_v1n/a
F11chromosomeF11:88927789..88927874 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:13408860..13408944 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_CFB0238 ID=USDA_CFB0238; Name=USDA_CFB0238; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
CATTTATAATTTTATCCTCT[C/G]TAACTAAAAAATACTCCACGCTAGA
TTCAAACTAGCATTTAACACCTTAATTGATGACTAGGCTA