USDA_CFB0171, USDA_CFB0171 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0171
AliasCFB0171
dbSNP IDN/A
TypeSNP
SNP AllelesT/G
5' Flanking SequenceTTGAAACAGTGAGGAGCTGTGTTTCTTGCTTCAGAAA
3' Flanking SequenceAATTTTTCCCCCTGTGTGCAACAGCACATAAAATTTTTGAAACAGTGA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:71841979..71842064 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:9722324..9722409 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:114680022..114680107 -Gossypium australe (G2) genome CRI_v1.1n/a
A04chromosomeA04:54358285..54358370 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:75388153..75388238 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:78324684..78324769 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:75522839..75522924 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:71151715..71151800 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:72194516..72194601 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:72780334..72780419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:74181939..74182024 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:82406054..82406139 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:72565024..72565109 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:79167231..79167316 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:98816170..98816255 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:100731497..100731582 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:9923622..9923705 +Gossypium anomalum (B1) genome NSF_v1n/a
F04chromosomeF04:82524145..82524230 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:156618354..156618439 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_CFB0171 ID=USDA_CFB0171; Name=USDA_CFB0171; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
TTGAAACAGTGAGGAGCTGTGTTTCTTGCTTCAGAAA[G/T]AATTTTTC
CCCCTGTGTGCAACAGCACATAAAATTTTTGAAACAGTGA