USDA_CFB0031, USDA_CFB0031 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0031
AliasCFB0031
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceTGATGGTAGTTTTAAATTTCCATCATATTTGTGTACCATA
3' Flanking SequenceTCTCACTGTTGAGAACTGAATGATTTGAGTCATGTGCCAGAGAGCAG
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:5648447..5648534 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_13chromosomeKI_13:25141632..25141717 +Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:6325748..6325835 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:55888262..55888349 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:7141079..7141164 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:6445310..6445397 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:5314964..5315051 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:5777159..5777246 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:5517153..5517240 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:5778608..5778695 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:5725886..5725973 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:5590497..5590584 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:5510831..5510918 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:6291851..6291938 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:5710964..5711051 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:5782540..5782627 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:5756316..5756403 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:6123241..6123328 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:6088151..6088238 -Gossypium anomalum (B1) genome NSF_v1n/a
chr02chromosomechr02:4013363..4013450 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:5261317..5261404 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:3342671..3342758 -Gossypium gossypioides (D6) genome ISU_v1n/a
E01chromosomeE01:7067541..7067626 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:4898120..4898207 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:4583156..4583157 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0031 ID=USDA_CFB0031; Name=USDA_CFB0031; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
TGATGGTAGTTTTAAATTTCCATCATATTTGTGTACCATA[A/T]TCTCA
CTGTTGAGAACTGAATGATTTGAGTCATGTGCCAGAGAGCAG