USDA_CFB0105, USDA_CFB0105 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0105
AliasCFB0105
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
5' Flanking SequenceCCTGTGTGGGCCCACACGCCCAAAATGGCTTTGGTCGTATGTCACACACGGTCTCGCACA AAG
3' Flanking SequenceCTAGCACACGACCATCTGGCGTCGA
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:37878292..37878380 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:34317974..34318062 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr4chromosomeDt_chr4:13358005..13358093 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:37388299..37388387 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:40283625..40283713 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:41298338..41298426 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:40037694..40037782 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:37732424..37732512 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:37848793..37848881 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:39499643..39499731 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:39072391..39072479 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:40788391..40788479 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:38344638..38344726 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:40595465..40595553 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:34950261..34950349 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:34781721..34781722 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0105 ID=USDA_CFB0105; Name=USDA_CFB0105; organism=Gossypium hirsutum; type=genetic_marker; length=93bp
CCTGTGTGGGCCCACACGCCCAAAATGGCTTTGGTCGTATGTCACACACG
GTCTCGCACAAAG[C/G]CTAGCACACGACCATCTGGCGTCGA