TAMU_GH_TBh111F15f458, TAMU_GH_TBh111F15f458 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh111F15f458
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i46476Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:39034679..39034679 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:41356381..41356481 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:18251769..18251869 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:36413183..36413283 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr8chromosomeDt_chr8:37203557..37203657 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:40692117..40692217 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:43747197..43747297 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:42925773..42925873 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:43718992..43719092 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:41573937..41574037 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:40603286..40603386 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:41889254..41889354 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:41762211..41762311 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:44114204..44114304 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:42447932..42448032 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:43688748..43688848 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:39534616..39534716 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_08chromosomeChr_08:28156741..28156841 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:27771524..27771624 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A65.37i46476GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A69.17i46476GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A66.4i46476GhView
Sequence
>TAMU_GH_TBh111F15f458 ID=TAMU_GH_TBh111F15f458; Name=TAMU_GH_TBh111F15f458; organism=Gossypium sp.; type=genetic_marker; length=105bp
TGCAAGCGTACAATGTCAATTGTAATATTTATAGTGTTACAATGAAACAC
[A/C]GAAGTATTTCAAGGATCAAACCCAAAGGATTCGGCGATTTAATGG
TTTCT