TAMU_GH_TBh104M15r365, TAMU_GH_TBh104M15r365 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh104M15r365
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45757Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:39716531..39716531 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:42079124..42079223 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:17553740..17553838 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr8chromosomeDt_chr8:38506702..38506802 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:41414793..41414893 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:44475890..44475990 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:43623674..43623774 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:44448187..44448287 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:42303486..42303586 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:41326018..41326117 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:42588598..42588697 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:42489526..42489626 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:44852918..44853016 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:43177880..43177979 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:44418245..44418345 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:40236712..40236810 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:40523790..40523889 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:28689293..28689392 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:41650906..41651008 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:28283263..28283362 +Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A68.03i45757GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A69.7i45757GhView
Sequence
>TAMU_GH_TBh104M15r365 ID=TAMU_GH_TBh104M15r365; Name=TAMU_GH_TBh104M15r365; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATTTGATGAAAACGCCACTTTTGAGACGTGTTTTCAAGAACGGGTTTTT
[C/T]TTTTCTTTTCAATCTCAACCCTCCCCCACGCCTATAAAAGGGGGG
CTCTC