TAMU_GH_TBh076I02f522, TAMU_GH_TBh076I02f522 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh076I02f522
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i42676Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:2259238..2259238 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018225.1chromosomeCM018225.1:2377565..2377665 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:63460041..63460141 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr7chromosomeDt_chr7:7754513..7754613 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:2619772..2619872 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:2509778..2509878 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:2476675..2476775 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:2530195..2530295 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:2475793..2475893 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:2430114..2430214 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:2446934..2447034 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:2367973..2368073 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:2384659..2384759 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:2438252..2438352 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:2504155..2504255 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:60942906..60943006 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:2313720..2313820 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07_6499927chromosomechr07_6499927:658..758 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:2070204..2070304 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:2474878..2474978 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:1888582..1888682 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:1843865..1843965 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:1938709..1938809 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:2819483..2819583 +Gossypium stocksii (E1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2017)AD_ch21_Dt.11N/A0i42676GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch21_Dt.11N/A8.55i42676GhView
Sequence
>TAMU_GH_TBh076I02f522 ID=TAMU_GH_TBh076I02f522; Name=TAMU_GH_TBh076I02f522; organism=Gossypium sp.; type=genetic_marker; length=105bp
CACTTCCATCACTTTATCAGCGAAAATCTTGTTCACCGAAACATAAGCTT
[G/T]CCATAGGGAACGATCGAACCGACCCCCGAGATCTGGTGATAAAGG
GAGCA