TAMU_GH_TBh024P16f108, TAMU_GH_TBh024P16f108 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh024P16f108
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37479Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:96727455..96727556 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:92200247..92200346 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:61695170..61695270 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:86066088..86066188 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:103165344..103165444 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:104779884..104779984 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:103267646..103267746 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:101204676..101204776 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:96742374..96742475 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:101711100..101711201 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:99016911..99017011 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:107421424..107421524 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:99634373..99634474 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:104944973..104945073 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:6537985..6538085 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:6374774..6374874 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A34.6SNPi37479GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A26.09i37479GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A29.49i37479GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A31.5i37479GhView
Sequence
>TAMU_GH_TBh024P16f108 ID=TAMU_GH_TBh024P16f108; Name=TAMU_GH_TBh024P16f108; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATCTCACAAGCTTGTGGATTCAAAACTTTGAAATCTCTTTGGCTAGAAGA
[A/G]TTTAACAACATATGTTGAGAGAAAAACACAAAAAAAAATTATTCA
ATATG