TAMU_GH_TBh015D09f378, TAMU_GH_TBh015D09f378 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBh015D09f378
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:18459845..18459945 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:66333796..66333896 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:100956870..100956970 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:28992456..28992556 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:21115623..21115723 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:20994758..20994858 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:19658381..19658481 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:18956899..18956999 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:19766683..19766783 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017648.1chromosomeCM017648.1:35945336..35945436 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:75700285..75700386 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:19769195..19769295 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:55254951..55255051 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:19696263..19696363 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:21246442..21246542 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:66265067..66265168 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:64306043..64306143 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:40241029..40241129 -Gossypium anomalum (B1) genome NSF_v1n/a
F04chromosomeF04:34465657..34465757 +Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:28450179..28450279 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>TAMU_GH_TBh015D09f378 ID=TAMU_GH_TBh015D09f378; Name=TAMU_GH_TBh015D09f378; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
TCCCTATTCTTTTAGCCTACCCTAAACCGAATACATCAATCACTTGTTAT
[C/T]CCTTTTGAACCGACCACCTAGACCAAGGACTAAGCCTTAATGAAT
CTGCT