TAMU_GH_TBb049B07r653, TAMU_GH_TBb049B07r653 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTAMU_GH_TBb049B07r653
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium hirsutum
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:52518577..52518677 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:51759129..51759229 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:61219787..61219887 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:32446716..32446816 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:45338337..45338437 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:54273134..54273234 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:56374155..56374255 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:55967201..55967301 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:54060304..54060404 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:53245957..53246057 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:53096204..53096304 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:53622292..53622392 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:58980401..58980501 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:53272302..53272402 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:57156927..57157027 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:57284508..57284608 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:58005580..58005680 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>TAMU_GH_TBb049B07r653 ID=TAMU_GH_TBb049B07r653; Name=TAMU_GH_TBb049B07r653; organism=Gossypium hirsutum; type=genetic_marker; length=105bp
AATAATAAATAAAATAAAAGCCAAAATCATGCTAATTTCTTTTATCTTCC
[A/G]CCGAATGTCGATAAAAGAAACAGCCATGGAAGTATTTTAGGGTTC
GACCC