TAMU_GH_TBb045J18r222, TAMU_GH_TBb045J18r222 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb045J18r222
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i27520Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:53665445..53665445 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D07chromosomeD07:56272461..56272561 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:54166612..54166712 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49598796..49598896 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:1051041..1051141 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr9chromosomeAt_chr9:47402082..47402182 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:53388456..53388556 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57349428..57349528 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:56603420..56603520 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:56975383..56975483 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:53306973..53307073 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:54556689..54556789 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55133215..55133315 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:55126246..55126346 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:56132610..56132710 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:55208242..55208342 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57568918..57569018 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:1875301..1875401 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:54029527..54029627 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:43821140..43821240 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:38738187..38738287 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:40828560..40828660 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:31793851..31793951 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39405700..39405800 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch16_Dt.07N/A1.26SNPi27520GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch16_Dt.07N/A2.2i27520GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch20_Dt.10N/A65.05i27520GhView
Sequence
>TAMU_GH_TBb045J18r222 ID=TAMU_GH_TBb045J18r222; Name=TAMU_GH_TBb045J18r222; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTCTGGCCCCGGTCAGTGCCAACAGGTCACTACACACATTTGCAGTTGTA
[G/T]ACCTAAACCCATTTTGGTACACTTGTTATCTTTGTTACTCGGATT
TGGAC